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Ligand · SGD

SGD · 6-thio-alpha-D-glucopyranose

SGD, 6-thio-alpha-D-glucopyranose (C6 H12 O5 S, 196.2 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
SGD
Formula
C6 H12 O5 S
Class
sugar
Structures
3
PDB entries
2

Binding sites

SGD in 3 structures; the first of them:

  • 4J3V · Crystal structure of barley limit dextrinase in complex with a branched thio-linked… · SGD C3 · binds ALA439, MET440, ASP698, TYR700, GLU726, LYS727
  • 4J3U · Crystal structure of barley limit dextrinase in complex with maltosyl- S-betacyclodextrin · SGD C1 · binds TRP512, PHE514, ASP541, ARG544, ASP545, PRO552, PHE553, PHE620
  • 4J3V · Crystal structure of barley limit dextrinase in complex with a branched thio-linked… · SGD C3 · binds ALA439, MET440, ASP698, TYR700, GLU726, LYS727

Residues it binds most

ASP 4, PHE 2, ALA 2, ARG 2, GLU 2, LYS 2, MET 2, TRP 2, TYR 2, PRO 1 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • GLC · alpha-D-glucopyranose
  • CL · Chloride ion
  • IOD · Iodide ion

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