Ligand · SE
SE · Selenium atom
SE, Selenium atom (Se, 79.0 g/mol), in the MolNFT structures on GenesisL1: bound in 12 records (10 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.
- Component
- SE
- Formula
- Se
- Class
- ion
- Structures
- 12
- PDB entries
- 10
Binding sites
SE in 12 structures; the first of them:
- 5BVG · Selenium incorporated nitrogenase MoFe-protein (Av1-Se2B) from A. vinelandii · SE B605 · binds ARG93, THR104, MET112, ASN65, TRP428, PHE450, ARG453
- 5FF4 · HydE from T. maritima in complex with (2R,4R)-TMeTDA · SE A410 · binds GLU139, TRP140, TYR145, ASN179, CYS183
- 6OP3 · Selenium incorporated FeMo-cofactor of nitrogenase from Azotobacter vinelandii with low… · SE A505 · binds VAL70, GLN191, HIS195, PHE381
- 7BAK · Crystal structure of SARS-CoV-2 main protease treated with ebselen · SE A401 · binds LEU27, HIS41, CYS145, HIS164
- 7T8G · G93A mutant of human SOD1 bound with MR6-8-2 in P21 space group · SE F204 · binds LEU106, CYS111, ILE113
- 7XMW · Crystal structure of anti-CRISPR protein AcrVIA2 · SE Z7
- 7ZCY · Sporosarcina pasteurii urease (SPU) co-crystallized in the presence of an… · SE C624 · binds CYS322
- 8YD7 · Structure of FADD/Caspase-8/cFLIP death effector domain assembly · SE G201 · binds SER2, VAL5, ARG45, LEU50, LEU55
- 6OP2 · Selenium incorporated femo-cofactor of nitrogenase from azotobacter vinelandii at high… · SE A505 · binds VAL70, HIS195, PHE381
- 6OP3 · Selenium incorporated femo-cofactor of nitrogenase from azotobacter vinelandii with low… · SE A505 · binds VAL70, HIS195, PHE381
- 7BAK · Crystal structure of SARS-cov-2 main protease treated with ebselen · SE A401 · binds HIS41, CYS145, HIS164
- 7BAL · Crystal structure of SARS-cov-2 main protease treated with ebselen derivative of MR6-31-2 · SE A401 · binds HIS41, CYS145, HIS164
Residues it binds most
HIS 9, CYS 8, PHE 8, VAL 7, ARG 4, LEU 3, TRP 4, ASN 3, GLN 2, MET 2 (residue and the binding sites it lines).
Found with
- CLF · FE(8)-S(7) cluster
- HCA · 3-hydroxy-3-carboxy-adipic acid
- IMD · Imidazole
- ICS · iron-sulfur-molybdenum cluster with interstitial carbon
- CA · Calcium ion
- MG · Magnesium ion
- ZN · Zinc ion
- CL · Chloride ion
- SO4 · Sulfate ion
- 5ZZ · (2~{R},4~{R})-2,5,5-trimethyl-1,3-thiazolidine-2,4-dicarboxylic acid
- CPS · 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonate
- ICG · iron-sulfur-molybdenum cluster with interstitial carbon with selenium incorporated
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