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Ligand · RG1

RG1 · Rhodopin b-D-glucoside

RG1, Rhodopin b-D-glucoside (C46 H66 O6, 715.0 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
RG1
Formula
C46 H66 O6
Class
sugar
Structures
6
PDB entries
3

Binding sites

RG1 in 6 structures; the first of them:

  • 1KZU · Integral membrane peripheral light harvesting complex from rhodopseudomonas acidophila… · RG1 A54 · binds TYR44, ALA29, LEU32, ALA33, ALA36
  • 1NKZ · Crystal structure of LH2 B800-850 from Rps. acidophila at 2.0 Angstrom resolution · RG1 A404 · binds TRP40, ALA43, TYR44, GLY47, VAL49, VAL28, ALA29, LEU32 and 4 more
  • 2FKW · Structure of LH2 from Rps. acidophila crystallized in lipidic mesophases · RG1 D1402 · binds GLN3, LYS5, ILE6, THR8, VAL9, ALA5, LEU19, LEU20 and 18 more
  • 1KZU · Integral membrane peripheral light harvesting complex from rhodopseudomonas acidophila… · RG1 A54 · binds TYR44, ALA29, LEU32, ALA33, ALA36
  • 1NKZ · Crystal structure of LH2 B800-850 from rps. acidophila at 2.0 ångström resolution · RG1 A404 · binds TRP40, ALA43, TYR44, GLY47, VAL49, VAL28, ALA29, LEU32 and 4 more
  • 2FKW · Structure of LH2 from rps. acidophila crystallized in lipidic mesophases · RG1 D1402 · binds GLN3, LYS5, ILE6, THR8, VAL9, ALA5, LEU19, LEU20 and 18 more

Residues it binds most

LEU 42, VAL 36, ALA 42, ILE 30, THR 36, GLN 30, TYR 42, GLY 36, GLU 30, TRP 32 (residue and the binding sites it lines).

Found with

  • BCL · Bacteriochlorophyll A
  • BEN · Benzamidine
  • BOG · octyl beta-D-glucopyranoside
  • LDA · Lauryl dimethylamine-N-oxide

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