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Ligand · R3Z

R3Z · 1-[(2S)-2,3-dihydro-1,4-benzodioxin-2-ylmethyl]-3-hydroxythieno[3,2-d]pyrimidine-2,4(1H,3H)-dione

R3Z, 1-[(2S)-2,3-dihydro-1,4-benzodioxin-2-ylmethyl]-3-hydroxythieno[3,2-d]pyrimidine-2,4(1H,3H)-dione (C15 H12 N2 O5 S, 332.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its…

Component
R3Z
Formula
C15 H12 N2 O5 S
Class
ligand
Structures
2
PDB entries
2

Binding sites

R3Z in 2 structures; the first of them:

  • 5FV7 · Human Fen1 in complex with an N-hydroxyurea compound · R3Z A1341 · binds GLY2, SER36, MET37, TYR40, ASP86, GLU158, GLU160, GLU178 and 3 more
  • 8CG9 · Crystal structure of human DNA cross-link repair 1A in complex with a cyclic… · R3Z A1103 · binds HIS732, HIS734, SER735, ASP736, HIS737, HIS793, ASP815, SER880 and 1 more

Residues it binds most

ASP 3, GLU 2, HIS 1, SER 2, GLY 2, MET 2, TYR 2 (residue and the binding sites it lines).

Found with

  • XOB · 1-[[(3~{R})-2,3-dihydro-1,4-benzodioxin-3-yl]methyl]-3-oxidanyl-thieno[3,2-d]pyrimidine-2,4-dione
  • MG · Magnesium ion
  • NI · Nickel (II) ion
  • ZN · Zinc ion
  • SO4 · Sulfate ion

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