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Ligand · PXP

PXP · Pyridoxine-5'-phosphate

PXP, Pyridoxine-5'-phosphate (C8 H12 N O6 P, 249.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with…

Component
PXP
Formula
C8 H12 N O6 P
Class
ligand
Structures
4
PDB entries
3

Binding sites

PXP in 4 structures; the first of them:

  • 1HO4 · Crystal structure of pyridoxine 5'-phosphate synthase in complex with pyridoxine… · PXP A802 · binds ASN9, HIS45, GLU72, CYS92, VAL94, THR102, THR103, PHE133 and 8 more
  • 1SZR · A Dimer interface mutant of ornithine decarboxylase reveals structure of gem diamine… · PXP C575 · binds ALA67, LYS69, CYS70, ASP88, ALA111, ARG154, HIS197, SER200 and 9 more
  • 7UBQ · The crystal structure of the wild-type of E. coli YGGS in complex with PNP · PXP A301 · binds VAL34, LYS36, ASN57, ILE82, ILE166, MET204, SER205, ARG220 and 4 more
  • 7UBQ · The crystal structure of the wild-type of E. COLI yggs in complex with pnp · PXP A301 · binds VAL34, LYS36, ASN57, ILE82, ILE166, MET204, SER205, ARG220 and 4 more

Residues it binds most

GLY 8, HIS 6, ASN 6, GLU 6, ILE 6, ARG 4, CYS 5, THR 5, PHE 6, VAL 6 (residue and the binding sites it lines).

Found with

  • ORX · N~2~-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-D-ornithine
  • PLG · N-glycine-[3-hydroxy-2-methyl-5-phosphonooxymethyl-pyridin-4-yl-methane]
  • PO4 · Phosphate ion

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