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Ligand · ORX

ORX · N~2~-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-D-ornithine

ORX, N~2~-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-D-ornithine (C13 H22 N3 O7 P, 363.3 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (3 PDB entries). Every binding site with its residues within…

Component
ORX
Formula
C13 H22 N3 O7 P
Class
ligand
Structures
3
PDB entries
3

Binding sites

ORX in 3 structures; the first of them:

  • 1NJJ · Crystal structure determination of T. brucei ornithine decarboxylase bound to D-ornithine… · ORX A602 · binds ALA67, LYS69, CYS70, ASP88, ALA111, ARG154, HIS197, GLY199 and 15 more
  • 1SZR · A Dimer interface mutant of ornithine decarboxylase reveals structure of gem diamine… · ORX B571 · binds TYR323, CYS360, ASP361, ALA67, LYS69, CYS70, ASP88, ALA111 and 14 more
  • 8D5R · Structure of Y430F D-ornithine/D-lysine decarboxylase complex with D-ornithine · ORX A502 · binds ALA78, LYS80, THR81, GLU99, ASN122, ARG169, HIS216, HIS218 and 14 more

Residues it binds most

GLY 7, ASP 7, TYR 7, ARG 7, ALA 7, CYS 7, GLU 7, HIS 7, LYS 7, PRO 7 (residue and the binding sites it lines).

Found with

  • GET · Geneticin
  • PLG · N-glycine-[3-hydroxy-2-methyl-5-phosphonooxymethyl-pyridin-4-yl-methane]
  • PUT · 1,4-diaminobutane
  • PXP · Pyridoxine-5'-phosphate
  • NA · Sodium ion
  • CL · Chloride ion
  • ACT · Acetate ion
  • DMS · Dimethyl sulfoxide
  • EDO · 1,2-ethanediol

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