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Ligand · PSO

PSO · 4'-hydroxymethyl-4,5',8-trimethylpsoralen

PSO, 4'-hydroxymethyl-4,5',8-trimethylpsoralen (C15 H14 O4, 258.3 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (5 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
PSO
Formula
C15 H14 O4
Class
ligand
Structures
8
PDB entries
5

Binding sites

PSO in 8 structures; the first of them:

  • 1FHY · Psoralen cross-linked D(CCGCTAGCGG) forms holliday junction · PSO A21 · binds DC4, DT5, DA6, DT15, DA16
  • 1FHZ · Psoralen cross-linked D(CCGGTACCGG) forms holliday junction · PSO B21 · binds DT5, DA6, DT15, DA16
  • 2B2B · Structural distortions in psoralen cross-linked DNA · PSO A21 · binds DC4, DT5, DA6, DT15, DA16
  • 1FHY · Psoralen cross-linked D(CCGCTAGCGG) forms holliday junction · PSO A21 · binds DC4, DT5, DA6, DT15, DA16
  • 1FHZ · Psoralen cross-linked D(CCGGTACCGG) forms holliday junction · PSO B21 · binds DT5, DA6, DT15, DA16
  • 203D · The solution structures of psoralen monoadducted and crosslinked DNA oligomers by NMR… · PSO A9 · binds DT4, DA5, DT12, DA13
  • 204D · The solution structures of psoralen monoadducted and crosslinked DNA oligomers by NMR… · PSO B1 · binds DT4, DA5, DT12, DA13
  • 2B2B · Structural distortions in psoralen cross-linked DNA · PSO A21 · binds DC4, DT5, DA6, DT15, DA16

Residues it binds most

DA 8, DT 8, DC 4 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • SPM · Spermine
  • NA · Sodium ion

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