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Ligand · PSF

PSF · 1,2-dicaproyl-sn-phosphatidyl-L-serine

PSF, 1,2-dicaproyl-sn-phosphatidyl-L-serine (C18 H34 N O10 P, 455.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
PSF
Formula
C18 H34 N O10 P
Class
ligand
Structures
2
PDB entries
2

Binding sites

PSF in 2 structures; the first of them:

  • 6ROH · Cryo-EM structure of the autoinhibited Drs2p-Cdc50p · PSF A2101 · binds GLY1096, ILE1099, ASN1100, PHE1103, LYS1149, ARG1219, TRP1223, LYS1227
  • 6WLW · The Vo region of human V-ATPase in state 1 (focused refinement) · PSF R902 · binds MET53, LYS54, ILE57, GLY373, ASN376, ILE377, THR442, VAL443 and 6 more

Residues it binds most

ILE 2, GLY 2, LYS 2, ASN 2, LEU 1, PHE 2, ARG 1, MET 1, SER 1, THR 1 (residue and the binding sites it lines).

Found with

  • BMA · beta-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • CLR · Cholesterol
  • PTY · Phosphatidylethanolamine
  • WJP · Methyl (3R,6Z,10E,14E)-3,7,11,15,19-pentamethylicosa-6, 10,14,18-tetraen-1-yl dihydrogen diphosphate
  • WJS · (2~{S})-2-$l^{4}-azanyl-3-[[(2~{R})-3-octadecanoyloxy-2-oxidanyl-propoxy]-oxidanyl-oxidanylidene-$l^{6}-phosphanyl]oxy-propanoic acid
  • WSS · tri(methyl)-[2-[[(2~{R})-2-[(~{Z})-octadec-9-enoyl]oxy-3-[(~{E})-1-oxidanylideneoctadec-9-enoxy]propoxy]-oxidanyl-phosphoryl]oxyethyl]azanium
  • MG · Magnesium ion
  • BGC · beta-D-glucopyranose
  • GAL · beta-D-galactopyranose
  • GLC · alpha-D-glucopyranose
  • MAN · alpha-D-mannopyranose

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