Ligand · PPU
PPU · Puromycin-5'-monophosphate
PPU, Puromycin-5'-monophosphate (C22 H30 N7 O8 P, 551.5 g/mol), in the MolNFT structures on GenesisL1: bound in 13 records (10 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…
- Component
- PPU
- Formula
- C22 H30 N7 O8 P
- Class
- ligand
- Structures
- 13
- PDB entries
- 10
Binding sites
PPU in 13 structures; the first of them:
- 1KQS · The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in… · PPU 476 · binds G2102, A2486, C2487, G2540, U2541, C2542, G2588, C2608 and 5 more
- 1Q81 · Crystal Structure of minihelix with 3' puromycin bound to A-site of the 50S ribosomal… · PPU 576 · binds G2102, A2103, A2486, C2487, U2541, C2542, G2588, C2608 and 4 more
- 1Q82 · Crystal Structure of CC-Puromycin bound to the A-site of the 50S ribosomal subunit · PPU 576 · binds G2102, A2103, A2486, C2487, U2541, C2542, G2588, C2608 and 4 more
- 1FG0 · Large ribosomal subunit complexed with a 13 bp minihelix- puromycin compound · PPU B76 · binds G2102, C2104, A2485, A2486, C2487, U2541, C2542, G2588 and 6 more
- 1KQS · The haloarcula marismortui 50S complexed with a pretranslocational intermediate in… · PPU 476 · binds G2102, A2486, C2487, G2540, U2541, C2542, G2588, C2608 and 5 more
- 1NJM · The crystal structure of the 50S large ribosomal subunit from deinococcus radiodurans… · PPU 535 · binds G2044, A2430, C2431, A2482, U2483, G2484, U2485, C2486 and 7 more
- 1NJO · The crystal structure of the 50S large ribosomal subunit from deinococcus radiodurans… · PPU 535 · binds A2430, C2431, A2482, U2483, G2484, U2485, C2486, C2552 and 5 more
- 1NJP · The crystal structure of the 50S large ribosomal subunit from deinococcus radiodurans… · PPU 535 · binds A2430, C2431, A2482, U2483, G2484, U2485, C2486, G2532 and 8 more
- 1Q81 · Crystal structure of minihelix with 3' puromycin bound to a-site of the 50S ribosomal… · PPU 576 · binds G2102, A2103, A2486, C2487, U2541, C2542, G2588, C2608 and 4 more
- 1Q82 · Crystal structure of cc-puromycin bound to the a-site of the 50S ribosomal subunit · PPU 576 · binds G2102, A2103, A2486, C2487, U2541, C2542, G2588, C2608 and 4 more
- 1VQL · The structure of the transition state analogue "dcsn" bound to the large ribosomal… · PPU 476 · binds G2102, A2486, C2487, G2540, U2541, C2542, OMG2588, G2618 and 5 more
- 1VQM · The structure of the transition state analogue "dan" bound to the large ribosomal subunit… · PPU 476 · binds G2102, A2486, C2487, G2540, U2541, C2542, OMG2588, G2618 and 5 more
- 1VQO · The structure of ccpmn bound to the large ribosomal subunit haloarcula marismortui · PPU 476 · binds G2102, A2486, C2487, G2540, U2541, C2542, OMG2588, G2618 and 3 more
Residues it binds most
C 13, G 13, U 13, A 13, OMG 3, UR3 3, DA 2 (residue and the binding sites it lines).
Found with
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