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Ligand · PCD

PCD · (molybdopterin-cytosine dinucleotide-S,S)-dioxo-aqua-molybdenum(v)

PCD, (molybdopterin-cytosine dinucleotide-S,S)-dioxo-aqua-molybdenum(v) (C19 H26 Mo N8 O16 P2 S2, 844.5 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (6 PDB entries). Every binding site with its residues within 4.5 Å…

Component
PCD
Formula
C19 H26 Mo N8 O16 P2 S2
Class
ligand
Structures
6
PDB entries
6

Binding sites

PCD in 6 structures; the first of them:

  • 1FFV · Carbon monoxide dehydrogenase from hydrogenophaga pseudoflava · PCD B1920 · binds GLN100, CYS101, CYS138, GLN237, GLY266, GLY267, PHE268, GLY269 and 33 more
  • 1RM6 · Structure of 4-hydroxybenzoyl-CoA reductase from Thauera aromatica · PCD A920 · binds GLN214, GLY243, GLY244, PHE245, GLY246, THR249, ALA356, MET357 and 32 more
  • 1SB3 · Structure of 4-hydroxybenzoyl-CoA reductase from Thauera aromatica · PCD A1920 · binds GLN214, GLY243, GLY244, PHE245, GLY246, THR249, ALA356, MET357 and 33 more
  • 1SIJ · Crystal structure of the Aldehyde Dehydrogenase (a.k.a. AOR or MOP) of Desulfovibrio… · PCD A921 · binds GLN99, CYS100, CYS139, ILE390, GLY419, THR420, PHE421, GLY422 and 32 more
  • 1VLB · Structure refinement of the aldehyde oxidoreductase from desulfovibrio gigas at 1.28 a · PCD A921 · binds GLN99, CYS100, CYS139, ILE390, GLY419, THR420, PHE421, GLY422 and 35 more
  • 8GY3 · Cryo-EM Structure of Membrane-Bound Aldehyde Dehydrogenase from Gluconobacter oxydans · PCD C801 · binds GLN96, CYS134, MET77, GLY78, GLN79, HIS80, VAL81, ALA84 and 31 more

Residues it binds most

GLY 9, GLN 9, ALA 9, SER 9, THR 9, VAL 9, CYS 9, ARG 9, ILE 9, GLU 9 (residue and the binding sites it lines).

Found with

  • FES · Fe2/s2 (inorganic) cluster
  • FAD · Flavin-adenine dinucleotide
  • CL · Chloride ion
  • SF4 · Iron/sulfur cluster
  • MG · Magnesium ion
  • SO4 · Sulfate ion
  • EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid
  • AST · Arsenite
  • HEC · Heme C
  • U10 · Ubiquinone-10
  • K · Potassium ion
  • NA · Sodium ion

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