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Ligand · OMT

OMT · S-dioxymethionine

OMT, S-dioxymethionine (C5 H11 N O4 S, 181.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
OMT
Formula
C5 H11 N O4 S
Class
ligand
Structures
4
PDB entries
2

Binding sites

OMT in 4 structures; the first of them:

  • 1EA0 · Alpha subunit of A. brasilense glutamate synthase · OMT A2473 · binds CYS1, HIS208, GLN209, ARG210, TYR211, GLN223, HIS230, ASN231 and 6 more
  • 2VDC · The 9.5 a resolution structure of glutamate synthase from cryo-electron microscopy and… · OMT A2473 · binds CYS1, HIS208, GLN209, ARG210, TYR211, GLN223, HIS230, ASN231 and 6 more
  • 1EA0 · Alpha subunit of a. brasilense glutamate synthase · OMT A2473 · binds CYS1, HIS208, GLN209, ARG210, TYR211, GLN223, HIS230, ASN231 and 6 more
  • 2VDC · The 9.5 a resolution structure of glutamate synthase from cryo- electron microscopy and… · OMT A2473 · binds CYS1, HIS208, GLN209, ARG210, TYR211, GLN223, HIS230, ASN231 and 6 more

Residues it binds most

GLN 16, GLU 16, HIS 16, SER 16, ARG 16, ASN 16, ASP 16, CYS 16, GLY 16, TYR 16 (residue and the binding sites it lines).

Found with

  • AKG · 2-oxoglutaric acid
  • F3S · FE3-S4 cluster
  • FMN · Flavin mononucleotide
  • FAD · Flavin-adenine dinucleotide
  • SF4 · Iron/sulfur cluster

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