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Ligand · OG6

OG6 · 6-[bis(oxidanyl)methyl]-5~{H}-pyrimidine-2,4-dione

OG6, 6-[bis(oxidanyl)methyl]-5~{H}-pyrimidine-2,4-dione (C5 H6 N2 O4, 158.1 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (5 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most…

Component
OG6
Formula
C5 H6 N2 O4
Class
ligand
Structures
5
PDB entries
5

Binding sites

OG6 in 5 structures; the first of them:

  • 8I6C · Crystal structure of Mycobacterium tuberculosis Uracil-DNA glycosylase in complex with… · OG6 A301 · binds GLY66, GLN67, ASP68, PRO69, TYR70, SER80, PHE81, SER93 and 1 more
  • 8K4F · DHODH in complex with compound A0 · OG6 A404 · binds LYS99, ASN144, ARG145, TYR146, GLY147, PHE148, ASN211, SER214 and 4 more
  • 9DI6 · Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with… · OG6 A1003 · binds LYS229, ASN274, SER275, CYS276, GLY277, PHE278, ASN342, SER345 and 4 more
  • 9DIK · Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with… · OG6 A1003 · binds LYS229, ASN274, SER275, CYS276, GLY277, PHE278, ASN342, SER345 and 4 more
  • 9DKQ · Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with… · OG6 A1003 · binds LYS229, ASN274, SER275, CYS276, GLY277, PHE278, ASN342, SER345 and 6 more

Residues it binds most

ASN 6, SER 6, GLY 6, LYS 5, PHE 6, PRO 6, THR 5, CYS 4, TYR 2, ARG 1 (residue and the binding sites it lines).

Found with

  • FMN · Flavin mononucleotide
  • A1A51 · ethyl 1,4-dimethyl-5-{[6-(trifluoromethyl)pyridin-3-yl]methyl}-1H-pyrazole-3-carboxylate
  • A1A52 · N-cyclopropyl-1,4-dimethyl-5-{[6-(trifluoromethyl)pyridin-3-yl]methyl}-1H-pyrazole-3-carboxamide
  • A1A5Q · 4,6-dicyclopropyl-3-{[3-fluoro-4-(trifluoromethyl)phenyl]methyl}-2-methyl-2,6-dihydro-7H-pyrazolo[3,4-d]pyridazin-7-one
  • FJW · 5-cyclopropyl-2-[1-[(2-fluorophenyl)methyl]pyrazolo[3,4-b]pyridin-3-yl]pyrimidin-4-amine
  • NA · Sodium ion
  • CL · Chloride ion
  • SO4 · Sulfate ion
  • ACT · Acetate ion
  • CIT · Citric acid
  • LDA · Lauryl dimethylamine-N-oxide
  • PG4 · Tetraethylene glycol

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