GL1X · GenesisL1 explorer

Ligand · O4B

O4B · 1,4,7,10,13,16-hexaoxacyclooctadecane

O4B, 1,4,7,10,13,16-hexaoxacyclooctadecane (C12 H24 O6, 264.3 g/mol), in the MolNFT structures on GenesisL1: bound in 50 records (36 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
O4B
Formula
C12 H24 O6
Class
ligand
Structures
50
PDB entries
36

Binding sites

O4B in 50 structures; the first of them:

  • 4XZW · Endo-glucanase chimera C10 · O4B A401 · binds THR17, ASN217, LEU220, SER221, SER256, LYS257
  • 5HXP · Crystal Structure of Z,Z-Farnesyl Diphosphate Synthase (D71M, E75A and H103Y Mutants)… · O4B C402 · binds GLU226, ILE228, TYR205, LEU208, GLN209, LYS212
  • 5ZW8 · PigA with FAD and proline · O4B A502 · binds VAL23, GLU40, LEU41, LYS44
  • 6AF6 · PigA with FAD and proline · O4B A502 · binds GLU40, LEU41, LYS44
  • 6BTY · Crystal structure of the PI3KC2alpha C2 domain in space group P41212 · O4B B1701 · binds LEU1663, ASP1667, PHE1668, THR1674, LYS1676, TYR1678
  • 6IMZ · Crystal structure of MTH1 in complex with 18-Crown-6 · O4B A204 · binds GLU73, VAL75, TYR136, LYS138, ASP147
  • 6IN1 · Crystal structure of the first bromodomain of BRD4 in complex with 18-Crown-6 · O4B A201 · binds TYR65, VAL69, THR73, LEU156, GLN159, LYS160, GLU163
  • 6IN2 · Crystal structure of BRD1 in complex with 18-Crown-6 · O4B A702 · binds GLN577, ASP580, LYS581, GLN658, VAL661, VAL662, HIS688
  • 6JWC · Mouse antibody 2B5 Fab in complex with PEG · O4B H506 · binds LYS19, TYR82, GLN84
  • 6LZY · Structure of Phytolacca americana UGT3 with 18-crown-6 · O4B B501 · binds LEU160, TYR161, LEU178, LEU214, LYS237, GLU238, LEU239, GLY240 and 9 more
  • 6Q9U · HDMX (14-111; C17S) COMPLEXED WITH COMPOUND 12 AT 2.4A; Structural states of Hdm2 and… · O4B A202 · binds ALA40, TYR60, VAL63, LYS64, LEU81
  • 6Q9W · X-ray structure of compound 15 bound to HdmX: Structural states of Hdm2 and HdmX: X-ray… · O4B A203 · binds LEU32, PRO33, LYS36, LEU81
  • 7C3Q · Human MdmX protein in complex with Nutlin3a · O4B A201 · binds LEU30, LYS34, LEU79
  • 7C44 · Crystal structure of the p53-binding domain of human MdmX protein in complex with Nutlin3a · O4B A202 · binds LEU30, PRO31, LYS34, LEU79
  • 7VEJ · Crystal structure of Phytolacca americana UGT3 with kaempferol and UDP-2fluoroglucose · O4B A602 · binds LEU160, TYR161, LEU178, LEU214, LYS237, GLU238, LEU239, GLY240 and 10 more
  • 7VEL · Crystal structure of Phytolacca americana UGT3 with UDP-2fluoroglucose · O4B A602 · binds LEU160, TYR161, LEU178, LEU214, LYS237, GLU238, LEU239, GLY240 and 9 more
  • 8HDG · Small peptide enhances the binding of nutline-3a to MdmX · O4B D202 · binds LEU31, PRO32, LYS35, LEU80, GLN64, LEU65, TYR66, ASP67 and 2 more
  • 5ZW2 · FAD complex of piga · O4B A502 · binds GLU40, LEU41, LYS44
  • 5ZW7 · FAD-piga complex at 1.3 a · O4B A502 · binds VAL23, GLU40, LEU41, LYS44
  • 5ZW8 · Piga with FAD and proline · O4B A502 · binds VAL23, GLU40, LEU41, LYS44
  • 6AF6 · Piga with FAD and proline · O4B A502 · binds GLU40, LEU41, LYS44
  • 6BTY · Crystal structure of the PI3KC2ALPHA C2 domain in space group P41212 · O4B B1701 · binds ASP1667, PHE1668, LYS1676, TYR1678

Residues it binds most

LEU 56, LYS 108, TYR 32, GLU 33, VAL 31, GLN 33, GLY 22, PRO 32, ASP 28, PHE 22 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion
  • CL · Chloride ion
  • EDO · 1,2-ethanediol
  • FAD · Flavin-adenine dinucleotide
  • NUT · 4-({(4S,5R)-4,5-bis(4-chlorophenyl)-2-[4-methoxy-2-(propan-2-yloxy)phenyl]-4,5-dihydro-1H-imidazol-1-yl}carbonyl)piperazin-2-one
  • U2F · Uridine-5'-diphosphate-2-deoxy-2-fluoro-alpha-D-glucose
  • K · Potassium ion
  • NA · Sodium ion
  • GOL · Glycerol
  • HEM · Protoporphyrin IX containing Fe
  • PEG · Di(hydroxyethyl)ether
  • CMO · Carbon monoxide

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