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Ligand · MRY

MRY · Meso-erythritol

MRY, Meso-erythritol (C4 H10 O4, 122.1 g/mol), in the MolNFT structures on GenesisL1: bound in 21 records (14 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
MRY
Formula
C4 H10 O4
Class
ligand
Structures
21
PDB entries
14

Binding sites

MRY in 21 structures; the first of them:

  • 1T7L · Crystal Structure of Cobalamin-Independent Methionine Synthase from T. maritima · MRY A1353 · binds LYS104, PHE105, PHE106, TYR112, TYR155, LEU156, ARG165, CYS205 and 2 more
  • 1XDJ · Crystal Structure of T. maritima Cobalamin-Independent Methionine Synthase complexed with… · MRY A1053 · binds LYS104, PHE105, PHE106, TYR112, TYR155, LEU156, ARG165, CYS205 and 1 more
  • 1XPG · Crystal Structure of T. maritima Cobalamin-Independent Methionine Synthase complexed with… · MRY A1890 · binds LYS104, PHE105, PHE106, TYR112, LEU156, ARG165, CYS205, ILE587
  • 1XR2 · Crystal Structure of oxidized T. maritima Cobalamin-Independent Methionine Synthase… · MRY A1205 · binds LYS104, PHE105, PHE106, TYR112, TYR155, LEU156, ARG165, CYS205 and 1 more
  • 5EUK · Cetuximab Fab in complex with F3H meditope variant · MRY C301 · binds GLN155, SER156, GLY157, ASN158, SER159
  • 5HHF · Crystal structure of Aspergillus fumigatus UDP-Galactopyranose mutase mutant H63A with… · MRY A602 · binds GLN438, TRP443, ARG445, ASN471, GLU478, LEU481, ASN482, GLU494
  • 5T1K · Cetuximab Fab in complex with CQFDA(Ph)2STRRLKC · MRY C301 · binds LEU154, GLN155, SER156, GLY157, SER159
  • 5U3D · Structure of meditope enabled trastuzumab I83E variant · MRY A301 · binds GLN37, ARG39, ARG45, ARG61, PHE62, GLU81, ASP82
  • 5U5F · MEDITOPE ENABLED TRASTUZUMAB I83E VARIANT IN COMPLEX WITH (Ac) CQFDA(PH)2STRRLRCGGSK · MRY B301 · binds TYR152, GLU155, PRO156, VAL157, THR158, ALA175, LEU185, 2GX5 and 1 more
  • 5U5M · Crystal structure of I83E meditope-enabled trastuzumab with azido-meditope · MRY B301 · binds GLU155, PRO156, VAL157, ALA175, LEU185, 2GX5, SER6
  • 5U6A · Crystal structure of I83E meditope-enabled trastuzumab with azido-PEG3-meditope · MRY B301 · binds TYR152, GLU155, PRO156, VAL157, ALA175, LEU185, 2GX5, SER6
  • 6UGV · Crystal structure of the Fab fragment of anti-TNFa antibody infliximab (Remicade) in a… · MRY H301 · binds GLY141, THR142, THR190, VAL191, PRO192
  • 7C64 · Crystal structure of beta-glycosides-binding protein of ABC transporter in an open state… · MRY A511 · binds ARG354, THR355, GLN358
  • 8U2M · Structure of P450Blt from Micromonospora sp. MW-13 in Complex with Biarylitide · MRY B403 · binds PRO106, LEU107, SER108, SER100, ALA101, GLU104, ALA210, ARG213 and 2 more
  • 5T1K · Cetuximab Fab in complex with CQFDA(PH)2STRRLKC · MRY C301 · binds GLN155, SER156, GLY157
  • 5U3D · Structure of meditope enabled trastuzumab I83E variant · MRY A301 · binds GLN37, ARG39, ARG45, ARG61, PHE62, GLU81, ASP82
  • 5U5F · Meditope enabled trastuzumab I83E variant in complex with (ac) CQFDA(PH)2STRRLRCGGSK · MRY B301 · binds TYR152, GLU155, PRO156, VAL157, ALA175, LEU185, 2GX5, SER6
  • 5U5M · Crystal structure of I83E meditope-enabled trastuzumab with azido- meditope · MRY B301 · binds GLU155, PRO156, VAL157, ALA175, LEU185, 2GX5, SER6
  • 5U6A · Crystal structure of I83E meditope-enabled trastuzumab with azido- PEG3-meditope · MRY B301 · binds GLU155, PRO156, VAL157, ALA175, LEU185, 2GX5, SER6
  • 6UGV · Crystal structure of the Fab fragment of anti-tnfa antibody infliximab (remicade) in a… · MRY H301 · binds GLY141, THR142, THR190, PRO192
  • 7C64 · Crystal structure of beta-glycosides-binding protein of ABC transporter in an open state… · MRY A511 · binds ARG354, THR355, GLN358

Residues it binds most

ARG 19, LEU 20, PHE 10, TYR 11, GLU 13, GLN 13, SER 10, THR 9, PRO 11, ALA 7 (residue and the binding sites it lines).

Found with

  • PO4 · Phosphate ion
  • SO4 · Sulfate ion
  • EDO · 1,2-ethanediol
  • PG4 · Tetraethylene glycol
  • ACE · Acetyl group
  • C2F · 5-methyl-5,6,7,8-tetrahydrofolic acid
  • ZN · Zinc ion
  • CL · Chloride ion
  • CO2 · Carbon dioxide
  • P33 · 3,6,9,12,15,18-hexaoxaicosane-1,20-diol
  • PEG · Di(hydroxyethyl)ether
  • PGE · Triethylene glycol

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