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Ligand · MN0

MN0 · methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid

MN0, methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid (C12 H21 N O10, 339.3 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its…

Component
MN0
Formula
C12 H21 N O10
Class
sugar
Structures
6
PDB entries
3

Binding sites

MN0 in 6 structures; the first of them:

  • 3SIS · Crystal structure of Porcine CRW-8 Rotavirus VP8* in complex with aceramido-GM3_Gc · MN0 A6535 · binds ARG101, SER144, HIS155, GLY156, ASN178, GLY187, TYR188, TYR189 and 1 more
  • 3TAY · Crystal structure of porcine rotavirus CRW-8 VP8* in complex with N-glycolylneuraminic… · MN0 A1000 · binds ARG101, SER144, HIS155, GLY156, ASN178, GLY187, TYR188, TYR189 and 1 more
  • 3TB0 · Crystal structure of Rhesus Rotavirus VP8* in complex with N-Glycolylneuraminic acid · MN0 A301 · binds ARG101, VAL144, THR146, TYR155, GLY156, LYS187, TYR188, TYR189 and 1 more
  • 3SIS · Crystal structure of porcine crw-8 rotavirus VP8* in complex with aceramido-GM3_GC · MN0 A6535 · binds ARG101, SER144, HIS155, GLY156, ASN178, GLY187, TYR188, TYR189 and 1 more
  • 3TAY · Crystal structure of porcine rotavirus crw-8 VP8* in complex with N- glycolylneuraminic… · MN0 A1000 · binds ARG101, SER144, HIS155, GLY156, ASN178, GLY187, TYR188, TYR189 and 1 more
  • 3TB0 · Crystal structure of rhesus rotavirus VP8* in complex with N- glycolylneuraminic acid · MN0 A301 · binds ARG101, VAL144, THR146, TYR155, GLY156, LYS187, TYR188, TYR189 and 1 more

Residues it binds most

TYR 8, GLY 8, SER 8, ARG 8, ASN 6, HIS 6, THR 4, LYS 2, VAL 2 (residue and the binding sites it lines).

Found with

  • NA · Sodium ion
  • MPD · (4S)-2-methyl-2,4-pentanediol
  • BEN · Benzamidine
  • GAL · beta-D-galactopyranose
  • GLC · alpha-D-glucopyranose
  • NGC · N-glycolyl-alpha-neuraminic acid
  • SO4 · Sulfate ion
  • 1PE · Pentaethylene glycol
  • EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid
  • GOL · Glycerol

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