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Ligand · MLY

MLY · N-dimethyl-lysine

MLY, N-dimethyl-lysine (C8 H18 N2 O2, 174.2 g/mol), in the MolNFT structures on GenesisL1: bound in 11 records (8 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
MLY
Formula
C8 H18 N2 O2
Class
ligand
Structures
11
PDB entries
8

Binding sites

MLY in 11 structures; the first of them:

  • 2R58 · Crystal Structure of the two MBT repeats from Sex-Comb on Midleg (SCM) in Complex with… · MLY A436 · binds ASP324, ASN327, LEU330, CYS332, PHE348, TRP351, ARG352, PHE355
  • 2RHU · Crystal structure of the 3-MBT repeats from human L3MBTL1 bound to dimethyl-lysine and in… · MLY A530 · binds ASP355, ASN358, LEU361, CYS363, PHE379, TRP382, TYR386, THR411 and 1 more
  • 2RHX · Crystal structure of the 3-MBT repeats from human L3MBTL1 bound to dimethyl-lysine · MLY A537 · binds ASP355, ASN358, LEU361, CYS363, PHE379, TRP382, TYR386, THR411
  • 2R58 · Crystal structure of the two mbt repeats from sex-comb on midleg (scm) in complex with… · MLY A436 · binds ASP324, ASN327, LEU330, CYS332, PHE348, TRP351, ARG352, PHE355
  • 2RHU · Crystal structure of the 3-mbt repeats from human L3MBTL1 bound to dimethyl-lysine and in… · MLY A530 · binds ASP355, ASN358, LEU361, CYS363, PHE379, TRP382, TYR386, THR411 and 1 more
  • 2RHX · Crystal structure of the 3-mbt repeats from human L3MBTL1 bound to dimethyl-lysine · MLY A537 · binds ASP355, ASN358, LEU361, CYS363, PHE379, TRP382, TYR386, THR411
  • 3LGF · Crystal structure of the 53BP1 tandem tudor domain in complex with P53K370ME2 · MLY B370 · binds TRP1495, ASN1498, TYR1502, PHE1519, ASP1521, TYR1523
  • 3LGL · Crystal structure of the 53BP1 tandem tudor domain in complex with P53K382ME2 · MLY B382 · binds TRP1495, ASN1498, TYR1502, ASP1521, TYR1523
  • 3LH0 · Crystal structure of the 53BP1 tandem tudor domain in complex with P53K372ME2 · MLY B372 · binds TRP1495, TYR1502, PHE1519, ASP1521, TYR1523
  • 4F6E · Crystal structure of the K182R, A183P mutant manganese superoxide dismutase from… · MLY D301 · binds VAL162, ARG201, ALA204, GLY205
  • 6B5Q · DCN1 bound to 38 · MLY D4 · binds THR113, GLN114, CYS115, ALA165, LYS166, ASN167, MET177

Residues it binds most

ASN 10, PHE 8, TYR 7, ASP 9, TRP 9, CYS 8, LEU 6, THR 6, GLN 4, ALA 3 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion
  • PGE · Triethylene glycol
  • PG4 · Tetraethylene glycol
  • PEG · Di(hydroxyethyl)ether
  • 1XY · (4R)-3,4-dihydro-2H-chromen-4-amine
  • 2KY · (2S)-amino(cyclopentyl)ethanoic acid
  • CZS · 3-(6-chloro-1,3-benzothiazol-2-yl)-L-alanine
  • MN · Manganese (II) ion
  • GOL · Glycerol
  • PPI · Propanoic acid
  • TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol

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