GL1X · GenesisL1 explorer

MolNFT v1 · #143645 · protein

DCN1 bound to 38

6B5Q: “DCN1 bound to 38”. X-ray diffraction, 3 ligands (CZS, 2KY, 1XY). MolNFT v1 #143645 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6B5Q
Type
protein
Length
378 residues
Chains
4
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q96GG9
Ligands
CZS, 2KY, 1XY

Structure

x-ray diffraction · 3 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein190—Q96GG9
B—protein186—Q96GG9
D, E—protein1——

Ligands and binding sites

  • CZS · 3-(6-chloro-1,3-benzothiazol-2-yl)-L-alanine · ligand · 2 copies · chains A, D, B, E
  • 2KY · (2S)-amino(cyclopentyl)ethanoic acid · ligand · 2 copies · chains A, D, B, E
  • 1XY · (4R)-3,4-dihydro-2H-chromen-4-amine · ligand · 2 copies · chains A, D, B, E
  • PPI · Propanoic acid · additive · 2 copies · chains A, B
  • PGE · Triethylene glycol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6B5Q · DCN1 bound to 38 · the same entry in another collection · chain A against A, TM-score 1.00
  • Q96GG9 · AlphaFold monomer V2.0 prediction for DCN1-like protein 1 (Q96GG9) · a predicted model of the same protein · chain B against A, TM-score 0.97

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