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Ligand · MDP

MDP · N-carboxyl-N-methyl-beta-muramic acid

MDP, N-carboxyl-N-methyl-beta-muramic acid (C11 H19 N O9, 309.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
MDP
Formula
C11 H19 N O9
Class
sugar
Structures
2
PDB entries
1

Binding sites

MDP in 2 structures; the first of them:

  • 1LOC · Interaction of a legume lectin with two components of the bacterial cell wall · MDP 11001 · binds ALA80, ASP81, THR96, GLY97, GLY98, GLY99, TYR100, PHE123 and 8 more
  • 1LOC · Interaction of a legume lectin with two components of the bacterial cell wall · MDP 1950 · binds ALA80, ASP81, THR96, GLY97, GLY98, GLY99, TYR100, PHE123 and 8 more

Residues it binds most

GLY 8, ALA 8, ASN 8, ASP 8, GLU 8, PHE 8, THR 6, TRP 8, TYR 8, DAL 7 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • MN · Manganese (II) ion
  • DAL · D-alanine

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