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Ligand · M1V

M1V · mesobiliverdin IX(alpha)

M1V, mesobiliverdin IX(alpha) (C33 H38 N4 O6, 586.7 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with…

Component
M1V
Formula
C33 H38 N4 O6
Class
ligand
Structures
3
PDB entries
3

Binding sites

M1V in 3 structures; the first of them:

  • 7T7U · Light Harvesting complex phycocyanin PC 630, from the cryptophyte Chroomonas sp. M1627 · M1V A101 · binds PHE14, ASN16, CYS19, GLU20, VAL21, LYS23, ASN24, ASN25 and 15 more
  • 8UHE · Structure of the far-red light-absorbing allophycocyanin core expressed during FaRLiP · M1V C201 · binds LEU61, TYR62, THR66, MET72, TYR73, THR74, CYS75, TYR78 and 21 more
  • 6XHH · Far-red absorbing dark state of JSC1_58120G3 with bound 18-1, 18-2 dihydrobiliverdin ixa… · M1V A801 · binds TYR561, PHE571, TRP588, ASP590, PRO591, TYR592, LEU593, GLY599 and 12 more

Residues it binds most

TYR 6, LEU 6, PHE 6, ILE 4, THR 5, ASP 6, PRO 6, CYS 5, LYS 4, ALA 5 (residue and the binding sites it lines).

Found with

  • CYC · Phycocyanobilin
  • AX9 · DiCys-(15,16)-Dihydrobiliverdin
  • CL · Chloride ion
  • EDO · 1,2-ethanediol
  • GOL · Glycerol

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