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Ligand · LPS

LPS · O-{hydroxy[((2r)-2-hydroxy-3-{[(1S)-1-hydroxypentadecyl]oxy}propyl)oxy]phosphoryl}-L-serine

LPS, O-{hydroxy[((2r)-2-hydroxy-3-{[(1S)-1-hydroxypentadecyl]oxy}propyl)oxy]phosphoryl}-L-serine (C21 H44 N O9 P, 485.6 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues…

Component
LPS
Formula
C21 H44 N O9 P
Class
ligand
Structures
2
PDB entries
2

Binding sites

LPS in 2 structures; the first of them:

  • 1NL2 · Bovine prothrombin fragment 1 in complex with calcium and lysophosphotidylserine · LPS A451 · binds LYS3, PHE5, LEU6, CGU7, ARG10, ARG16, CGU17, CGU21
  • 8KH5 · Cryo-EM structure of the GPR174-Gs complex bound to endogenous lysoPS · LPS A402 · binds TYR22, TYR26, ARG75, TYR79, PHE95, LYS98, TYR99, TYR103 and 19 more

Residues it binds most

PHE 2, TYR 1, ARG 2, LEU 2, CGU 1, LYS 2, GLY 1, ILE 1, ALA 1, ASP 1 (residue and the binding sites it lines).

Found with

  • CLR · Cholesterol
  • CA · Calcium ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • CL · Chloride ion

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