Ligand · LDY

LDY · alpha-D-lyxopyranose

LDY, alpha-D-lyxopyranose (C5 H10 O5, 150.1 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component: LDY
Formula: C5 H10 O5
Class: sugar
Structures: 2
PDB entries: 1

Binding sites

LDY in 2 structures; the first of them:

2RI9 · Penicillium citrinum alpha-1,2-mannosidase in complex with a substrate analog · LDY F2 · binds GLU1122, ILE1125, ARG1126, LEU1330, GLU1409, PHE1468, GLU1472, THR1501 and 1 more
2RI9 · Penicillium citrinum alpha-1,2-mannosidase in complex with a substrate analog · LDY F2 · binds GLU1122, ILE1125, ARG1126, LEU1330, GLU1409, PHE1468, GLU1472, THR1501 and 1 more

Residues it binds most

GLU 4, PHE 4, ARG 4, ILE 4, LEU 4, THR 4 (residue and the binding sites it lines).

Found with

CA · Calcium ion
MAN · alpha-D-mannopyranose
MMA · methyl alpha-D-mannopyranoside
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
NDG · 2-acetamido-2-deoxy-alpha-D-glucopyranose
GOL · Glycerol

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