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Ligand · LDK

LDK · (2~{S})-2-[[(2~{S})-1,5-bis(oxidanyl)-1,5-bis(oxidanylidene)pentan-2-yl]sulfamoylamino]pentanedioic acid

LDK, (2~{S})-2-[[(2~{S})-1,5-bis(oxidanyl)-1,5-bis(oxidanylidene)pentan-2-yl]sulfamoylamino]pentanedioic acid (C10 H16 N2 O10 S, 356.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with…

Component
LDK
Formula
C10 H16 N2 O10 S
Class
ligand
Structures
2
PDB entries
1

Binding sites

LDK in 2 structures; the first of them:

  • 6SGP · X-ray structure of human glutamate carboxypeptidase II (GCPII) - the E424M inactive… · LDK A826 · binds PHE209, ARG210, ASN257, ASP387, MET424, GLU425, GLY427, LEU428 and 11 more
  • 6SGP · X-ray structure of human glutamate carboxypeptidase II (gcpii) - the E424M inactive… · LDK A826 · binds PHE209, ARG210, ASN257, ASP387, MET424, GLU425, GLY427, LEU428 and 11 more

Residues it binds most

ARG 2, ASN 2, ASP 2, GLU 2, GLY 2, TYR 2, HIS 2, LEU 2, LYS 2, MET 2 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • NA · Sodium ion
  • ZN · Zinc ion
  • BMA · beta-D-mannopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • CL · Chloride ion
  • PEG · Di(hydroxyethyl)ether
  • PGE · Triethylene glycol

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