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Ligand · L6N

L6N · (2~{R},3~{R},4~{S},5~{S},6~{R})-6-(methoxymethyl)oxane-2,3,4,5-tetrol

L6N, (2~{R},3~{R},4~{S},5~{S},6~{R})-6-(methoxymethyl)oxane-2,3,4,5-tetrol (C7 H14 O6, 194.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues…

Component
L6N
Formula
C7 H14 O6
Class
sugar
Structures
2
PDB entries
2

Binding sites

L6N in 2 structures; the first of them:

  • 8H4V · Mincle CRD complex with PGL trisaccharide · L6N E3 · binds GLU168, ASN170, LEU172, GLU176, ARG182, ASN192, ASP193, VAL194
  • 8HB5 · Crystal structure of Mincle in complex with HD-275 · L6N A1004 · binds GLU168, ASN170, LEU172, GLU176, ARG182, ASN192, ASP193, VAL194 and 1 more

Residues it binds most

ASN 3, GLU 3, ARG 3, ASP 3, LEU 3, VAL 3, PHE 2 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • 7CV · 6-deoxy-2,3-di-O-methyl-alpha-L-mannopyranose
  • MRP · 3-O-methyl-alpha-L-rhamnopyranose

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