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Ligand · KIR

KIR · Kirromycin

KIR, Kirromycin (C43 H60 N2 O12, 796.9 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (8 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
KIR
Formula
C43 H60 N2 O12
Class
ligand
Structures
8
PDB entries
8

Binding sites

KIR in 8 structures; the first of them:

  • 1OB2 · E. coli elongation factor EF-Tu complexed with the antibiotic kirromycin, a GTP analog… · KIR A1394 · binds ILE92, ALA96, ARG116, GLU117, LEU120, LEU121, ARG123, GLN124 and 21 more
  • 4V5G · The crystal structure of the 70S ribosome bound to EF-Tu and tRNA · KIR AZ502 · binds ILE93, ALA97, ARG117, GLU118, LEU121, ARG124, GLN125, VAL126 and 19 more
  • 4V5P · The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S… · KIR AZ502 · binds ILE93, ALA97, ARG117, GLU118, LEU121, LEU122, ARG124, GLN125 and 21 more
  • 4V5Q · The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the… · KIR AZ502 · binds ILE93, ALA97, ARG117, GLU118, LEU121, LEU122, ARG124, GLN125 and 17 more
  • 4V5R · The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S… · KIR AZ502 · binds ILE93, ALA97, ARG117, GLU118, LEU121, LEU122, ARG124, GLN125 and 21 more
  • 4V5S · The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S… · KIR AZ502 · binds ILE93, ALA97, ARG117, LEU121, ARG124, GLN125, VAL126, TYR161 and 15 more
  • 4V8Q · Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome · KIR BZ1002 · binds ILE93, ALA97, ARG117, GLU118, LEU121, ARG124, GLN125, VAL126 and 18 more
  • 7ABZ · Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome. · KIR 6401 · binds ILE92, ALA96, LEU120, LEU121, ARG123, GLN124, VAL125, GLY126 and 15 more

Residues it binds most

ARG 13, GLY 13, GLU 13, ALA 13, TYR 13, LEU 13, GLN 13, PHE 13, ILE 13, THR 13 (residue and the binding sites it lines).

Found with

  • GDP · Guanosine-5'-diphosphate
  • ZN · Zinc ion
  • MG · Magnesium ion
  • GNP · Phosphoaminophosphonic acid-guanylate ester
  • PAR · Paromomycin
  • FRU · beta-D-fructofuranose
  • GLC · alpha-D-glucopyranose

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