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Ligand · JDO

JDO · rebaudioside D

JDO, rebaudioside D (C50 H80 O28, 1129.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
JDO
Formula
C50 H80 O28
Class
ligand
Structures
2
PDB entries
1

Binding sites

JDO in 2 structures; the first of them:

  • 7ES2 · a mutant of glycosyktransferase in complex with UDP and Reb D · JDO A502 · binds TRP22, ALA24, GLY26, ALA27, THR88, HIS93, ARG103, ASP128 and 12 more
  • 7ES2 · A mutant of glycosyktransferase in complex with udp and reb D · JDO A502 · binds TRP22, ALA24, GLY26, ALA27, THR88, HIS93, ARG103, ASP128 and 11 more

Residues it binds most

ALA 2, PHE 2, ASP 2, GLY 2, ARG 2, ASN 2, GLU 2, HIS 2, LEU 2, MET 2 (residue and the binding sites it lines).

Found with

  • UDP · Uridine-5'-diphosphate

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