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Ligand · HT9

HT9 · coproporphyrin III

HT9, coproporphyrin III (C36 H38 N4 O8, 654.7 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (7 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
HT9
Formula
C36 H38 N4 O8
Class
ligand
Structures
8
PDB entries
7

Binding sites

HT9 in 8 structures; the first of them:

  • 7DNY · Cryo-EM structure of the human ABCB6 (coproporphyrin III-bound) · HT9 A904 · binds TRP546, TYR550, MET553, TRP546, TYR550
  • 8AT8 · Structure of coproporphyrin III-LmCpfC · HT9 A406 · binds TYR12, GLY13, THR14, PRO15, TYR24, TYR25, ILE28, LEU42 and 18 more
  • 8AW7 · Structure of coproporphyrin III-LmCpfC R45L · HT9 A402 · binds TYR12, GLY13, THR14, PRO15, TYR24, TYR25, ILE28, HIS30 and 14 more
  • 8BBV · Coproporphyrin III - LmCpfC complex soaked 2min with Fe2+ · HT9 A404 · binds TYR12, GLY13, THR14, PRO15, TYR24, TYR25, ILE28, ARG29 and 22 more
  • 8OFL · Coproporphyrin III - LmCpfC complex soaked 4min with Fe2+ · HT9 A403 · binds TYR12, GLY13, THR14, PRO15, TYR24, TYR25, ILE28, LEU42 and 18 more
  • 8OMM · Coproporphyrin III - LmCpfC complex soaked 3min with Fe2+ · HT9 A404 · binds TYR12, GLY13, THR14, PRO15, TYR24, TYR25, ILE28, ARG29 and 19 more
  • 9F0F · Coproporphyrin III - LmCpfC WT complex soaked with Fe2+ and anomalous densities · HT9 A401 · binds TYR12, GLY13, THR14, PRO15, TYR24, TYR25, ILE28, ARG29 and 21 more
  • 7DNY · Cryo-EM structure of the human ABCB6 (coproporphyrin III-bound) · HT9 A904 · binds TRP546, TYR550, MET553, TRP546, TYR550

Residues it binds most

TYR 8, LEU 6, HIS 6, SER 6, GLY 6, TRP 8, PHE 6, THR 6, ARG 5, GLU 6 (residue and the binding sites it lines).

Found with

  • EDO · 1,2-ethanediol
  • GOL · Glycerol
  • FE2 · Fe (II) ion
  • Y01 · Cholesterol hemisuccinate
  • CL · Chloride ion
  • ACT · Acetate ion
  • CA · Calcium ion
  • FE · Fe (III) ion
  • MG · Magnesium ion

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