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Ligand · GMI

GMI · [2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-1,3-thiazol-5-yl]ethoxy-oxidanyl-phosphoryl]methylphosphonic acid

GMI, [2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-1,3-thiazol-5-yl]ethoxy-oxidanyl-phosphoryl]methylphosphonic acid (C13 H21 N4 O6 P2 S +1, 423.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB…

Component
GMI
Formula
C13 H21 N4 O6 P2 S +1
Class
ligand
Structures
4
PDB entries
2

Binding sites

GMI in 4 structures; the first of them:

  • 7TDB · Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate… · GMI A101 · binds G19, U20, U39, G40, G42, A43, C57, C58 and 5 more
  • 7TDC · Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate… · GMI A101 · binds G19, U20, U39, G40, G42, A43, C57, C58 and 4 more
  • 7TDB · Crystal structure of the E. COLI thim riboswitch in complex with thiamine bisphosphonate… · GMI A101 · binds G19, U20, U39, G40, G42, A43, C57, C58 and 5 more
  • 7TDC · Crystal structure of the E. COLI thim riboswitch in complex with thiamine bisphosphonate… · GMI A101 · binds G19, U20, U39, G40, G42, A43, C57, C58 and 4 more

Residues it binds most

G 4, C 4, U 4, A 4 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • CA · Calcium ion
  • MN · Manganese (II) ion

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