MolNFT v1 · #188133 · RNA
Crystal structure of the E. COLI thim riboswitch in complex with thiamine bisphosphonate, manganese ions
7TDB: “Crystal structure of the E. COLI thim riboswitch in complex with thiamine bisphosphonate, manganese ions”. X-ray diffraction, 3 ligands (GMI, MG, MN). MolNFT v1 #188133 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7TDB
- Type
- RNA
- Length
- 79 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- GMI, MG, MN
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | rna | 79 | — | — |
Ligands and binding sites
- GMI · [2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-1,3-thiazol-5-yl]ethoxy-oxidanyl-phosphoryl]methylphosphonic acid · ligand · chains A
- MG · Magnesium ion · metal · 6 copies · chains A
- MN · Manganese (II) ion · metal · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7TDB · Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7TDB · PDBe 7TDB
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