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Ligand · FD8

FD8 · N-[3-(pentafluorophenoxy)phenyl]-2-(trifluoromethyl)benzamide

FD8, N-[3-(pentafluorophenoxy)phenyl]-2-(trifluoromethyl)benzamide (C20 H9 F8 N O2, 447.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it…

Component
FD8
Formula
C20 H9 F8 N O2
Class
ligand
Structures
4
PDB entries
2

Binding sites

FD8 in 4 structures; the first of them:

  • 3AE9 · Crystal structure of porcine heart mitochondrial complex II bound with… · FD8 C1201 · binds PRO169, SER170, TRP173, HIS216, ILE218, ILE30, MET39, SER42 and 4 more
  • 4YTN · Crystal structure of Mitochondrial rhodoquinol-fumarate reductase from Ascaris suum with… · FD8 C202 · binds PRO193, SER194, TRP197, ILE242, LEU60, TRP69, SER72, GLY73 and 4 more
  • 3AE9 · Crystal structure of porcine heart mitochondrial complex II bound with… · FD8 C1201 · binds PRO169, SER170, TRP173, HIS216, ILE218, ILE30, MET39, SER42 and 4 more
  • 4YTN · Crystal structure of mitochondrial rhodoquinol-fumarate reductase from ascaris suum with… · FD8 C202 · binds PRO193, SER194, TRP197, ILE242, LEU60, TRP69, SER72, GLY73 and 4 more

Residues it binds most

SER 6, ARG 6, ILE 6, TRP 6, ASP 6, PRO 6, TYR 6, GLY 4, HIS 4, LEU 4 (residue and the binding sites it lines).

Found with

  • F3S · FE3-S4 cluster
  • FAD · Flavin-adenine dinucleotide
  • FES · Fe2/s2 (inorganic) cluster
  • HEM · Protoporphyrin IX containing Fe
  • SF4 · Iron/sulfur cluster
  • MLI · Malonate ion
  • EPH · L-alpha-phosphatidyl-beta-oleoyl-gamma-palmitoyl-phosphatidylethanolamine

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