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Ligand · F42

F42 · Coenzyme F420

F42, Coenzyme F420 (C29 H36 N5 O18 P, 773.6 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
F42
Formula
C29 H36 N5 O18 P
Class
ligand
Structures
5
PDB entries
4

Binding sites

F42 in 5 structures; the first of them:

  • 5JV4 · Structure of F420 binding protein, MSMEG_6526, from Mycobacterium smegmatis with F420… · F42 A201 · binds VAL30, PRO31, VAL32, VAL33, THR50, ALA51, VAL52, ASP53 and 6 more
  • 7KL8 · Structure of F420 binding protein Rv1558 from Mycobacterium tuberculosis with F420 bound · F42 B201 · binds LEU12, SER15, GLN18, LEU33, GLY45, ALA46, LYS47, THR48 and 14 more
  • 8G8P · F420-2/GTP(GDP) complex of F420-gamma glutamyl ligase (CofE) from Archaeoglobus fulgidus · F42 AAA301 · binds PRO91, PHE92, LEU94, VAL104, ASN105, ASP109, ALA110, SER111 and 6 more
  • 8QPL · F420-Dependent Methylene-Tetrahydromethanopterin Reductase with F420 from… · F42 A401 · binds THR34, ASP35, HIS36, GLY61, VAL62, THR63, ASN64, GLY93 and 18 more
  • 7KL8 · Structure of F420 binding protein RV1558 from mycobacterium tuberculosis with F420 bound · F42 B201 · binds LEU12, SER15, GLN18, LEU33, GLY45, ALA46, LYS47, THR48 and 14 more

Residues it binds most

VAL 11, TRP 10, LEU 11, THR 11, PRO 11, ALA 11, ASP 9, GLY 5, ARG 7, ASN 6 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion
  • 6J4 · Coenzyme F420-3
  • NA · Sodium ion
  • GDP · Guanosine-5'-diphosphate
  • GTP · Guanosine-5'-triphosphate
  • MN · Manganese (II) ion
  • MPD · (4S)-2-methyl-2,4-pentanediol
  • MRD · (4R)-2-methylpentane-2,4-diol

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