Ligand · DVC

DVC · (2R,4S,6S)-4-azanyl-4,6-dimethyl-oxane-2,5,5-triol

DVC, (2R,4S,6S)-4-azanyl-4,6-dimethyl-oxane-2,5,5-triol (C7 H15 N O4, 177.2 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most…

Component: DVC
Formula: C7 H15 N O4
Class: sugar
Structures: 8
PDB entries: 4

Binding sites

DVC in 8 structures; the first of them:

1GO6 · Balhimycin in complex with Lys-D-ala-D-ala · DVC A9 · binds OMY6, 3FG7, OMZ2, ASN3
1HHU · Balhimycin in complex with D-Ala-D-Ala · DVC A9 · binds OMY6, 3FG7, OMZ2, ASN3
1HHY · Deglucobalhimycin in complex with D-Ala-D-Ala · DVC A9 · binds OMY6, 3FG7, OMZ2, ASN3
1HHZ · Deglucobalhimycin in complex with cell wall pentapeptide · DVC A9 · binds OMY6, 3FG7
1GO6 · Balhimycin in complex with lys-D-ala-D-ala · DVC A9 · binds OMY6, 3FG7, OMZ2, ASN3
1HHU · Balhimycin in complex with D-ala-D-ala · DVC A9 · binds OMY6, 3FG7, OMZ2, ASN3
1HHY · Deglucobalhimycin in complex with D-ala-D-ala · DVC A9 · binds OMY6, 3FG7, OMZ2, ASN3
1HHZ · Deglucobalhimycin in complex with cell wall pentapeptide · DVC A9 · binds OMY6, 3FG7

Residues it binds most

3FG 34, ASN 32, OMY 34, OMZ 32, MLU 8, LYS 2, FGA 1 (residue and the binding sites it lines).

Found with

BGC · beta-D-glucopyranose
CIT · Citric acid
MPD · (4S)-2-methyl-2,4-pentanediol
NA · Sodium ion
MRD · (4R)-2-methylpentane-2,4-diol
PGO · S-1,2-propanediol
PGR · R-1,2-propanediol
FGA · Gamma-D-glutamic acid

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