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Ligand · DPN

DPN · D-phenylalanine

DPN, D-phenylalanine (C9 H11 N O2, 165.2 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (5 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
DPN
Formula
C9 H11 N O2
Class
ligand
Structures
5
PDB entries
5

Binding sites

DPN in 5 structures; the first of them:

  • 1MCJ · Principles and pitfalls in designing site directed peptide ligands · DPN P5 · binds TYR38, PHE99, TYR34, SER36, VAL48, ILE50, TYR51, GLU52 and 2 more
  • 1TKH · Streptomyces griseus aminopeptidase complexed with D-Phenylalanine · DPN A911 · binds LYS10, SER254, ILE256, ASN257, ASP258
  • 2FMZ · Carbonic anhydrase activators. Activation of isoforms I, II, IV, VA, VII and XIV with L… · DPN A300 · binds TRP5, ASN62, HIS64, ASN67, GLN92, THR200, PRO201, PRO202
  • 5E2L · 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase from Mycobacterium tuberculosis in… · DPN A507 · binds PHE91, MET92, ASN94, ARG171, ALA174, ASN175, ALA178, TRP3 and 7 more
  • 5E7Z · 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase from Mycobacterium tuberculosis in… · DPN A506 · binds PHE91, MET92, ARG171, ALA174, ASN175, ALA178, TRP3, VAL5 and 5 more

Residues it binds most

VAL 5, ALA 4, TYR 6, ASN 6, PHE 6, ARG 5, GLU 2, TRP 5, ASP 3, HIS 3 (residue and the binding sites it lines).

Found with

  • MN · Manganese (II) ion
  • ZN · Zinc ion
  • SO4 · Sulfate ion
  • GOL · Glycerol
  • ACE · Acetyl group
  • DPR · D-proline
  • CA · Calcium ion
  • HG · Mercury (II) ion
  • CL · Chloride ion
  • NH2 · Amino group

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