Ligand · DMW

DMW · 2,3-dimethyl-1,4-naphthoquinone

DMW, 2,3-dimethyl-1,4-naphthoquinone (C12 H10 O2, 186.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component: DMW
Formula: C12 H10 O2
Class: ligand
Structures: 2
PDB entries: 1

Binding sites

DMW in 2 structures; the first of them:

2BS4 · Glu C180 -> ile variant QUINOL:FUMARATE reductase fromwolinella succinogenes · DMW E1244 · binds PHE40, HIS44, PHE47, VAL48, MET58, VAL61, THR62, PHE65 and 3 more
2BS4 · Glu C180 -> ile variant QUINOL:FUMARATE reductase from wolinella succinogenes · DMW E1244 · binds PHE40, HIS44, PHE47, VAL48, MET58, VAL61, THR62, PHE65 and 3 more

Residues it binds most

PHE 4, VAL 4, HIS 4, ILE 4, LEU 4, MET 4, THR 4 (residue and the binding sites it lines).

Found with

F3S · FE3-S4 cluster
FAD · Flavin-adenine dinucleotide
FES · Fe2/s2 (inorganic) cluster
HEM · Protoporphyrin IX containing Fe
SF4 · Iron/sulfur cluster
NA · Sodium ion
CIT · Citric acid
LMT · Dodecyl-beta-D-maltoside

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