Ligand · DM1
DM1 · Daunomycin
DM1, Daunomycin (C27 H29 N O10, 527.5 g/mol), in the MolNFT structures on GenesisL1: bound in 35 records (19 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.
- Component
- DM1
- Formula
- C27 H29 N O10
- Class
- ligand
- Structures
- 35
- PDB entries
- 19
Binding sites
DM1 in 35 structures; the first of them:
- 110D · Anthracycline-DNA interactions at unfavourable base base-pair triplet-binding sites… · DM1 A7 · binds DC4, DC5, DG6
- 152D · Diversity of water ring size at DNA interfaces: hydration and dynamics of… · DM1 A7 · binds DT4, DC5, DG6
- 1D10 · Structural comparison of anticancer drug-DNA complexes. adriamycin and daunomycin · DM1 A7 · binds DT4, DC5, DG6
- 1D11 · Interactions between an anthracycline antibiotic and DNA molecular structure of… · DM1 A7 · binds DA4, DC5, DG6
- 1D33 · Formaldehyde cross-links daunorubicin and DNA efficiently: HPLC and X-RAY diffraction… · DM1 A7 · binds G494, DC5, DG6
- 1DA0 · DNA-drug interactions: the crystal structure of D(CGATCG) complexed with daunomycin · DM1 A7 · binds DT4, DC5, DG6
- 1JO2 · Crystal Structure of the B-DNA Hexamer (CgATCG).Daunomycin Complex Containing a Ribose at… · DM1 A7 · binds DC1, G2, DA3, DT4
- 1O0K · Structure of the First Parallel DNA Quadruplex-drug Complex · DM1 B25 · binds DT1001, DG1002, DG1008, DG1014, DG1015, DG1016
- 1VTH · DNA-drug interactions: the crystal structures of D(TGTACA) complexed with daunomycin · DM1 A7 · binds DA4, DC5, DA6
- 1VTI · DNA-drug interactions: the crystal structures of D(TGATCA) complexed with daunomycin · DM1 A7 · binds DT4, DC5, DA6
- 2D34 · Formaldehyde cross-links daunorubicin and DNA efficiently: hplc and X-ray diffraction… · DM1 A7 · binds A404, DC5, DG6
- 308D · Binding of daunomycin to B-D-glucosylated DNA found in protozoa trypanosoma brucei… · DM1 A14 · binds DA4, DC5, DG6, DC7, DG8, DT9, DA10
- 3F8F · Crystal structure of multidrug binding transcriptional regulator LmrR complexed with… · DM1 A127 · binds MET8, ALA11, VAL15, MET89, ALA92, PHE93, TRP96, ASP100 and 6 more
- 3TVB · A Highly Symmetric DNA G-4 Quadruplex/drug Complex · DM1 A9 · binds DG1, DG2
- 427D · 5'-D(*CP*GP*CP*(CH2-DM1)GP*CP*G)-3' · DM1 A7 · binds G494, DC5, DG6
- 4KR8 · Salmonella typhi OmpF complex with Daunomycin · DM1 C401 · binds LYS16, ARG20, TYR36, ARG60, ARG77, TYR97, TYR112, PHE113 and 5 more
- 7QZ6 · Transcriptional regulator LmrR with bound daunomycin and with Trp-67 and Trp-96 replaced… · DM1 A201 · binds MET8, ALA11, VAL15, ASN19, ALA92, PHE93, FTR96, MET8 and 7 more
- 7QZ7 · Transcriptional regulator LmrR with bound daunomycin and with Trp-67 and Trp-96 replaced… · DM1 B201 · binds MET8, VAL15, ASN19, ALA92, PHE93, TFW96, MET8, VAL15 and 5 more
- 7QZ8 · Transcriptional regulator LmrR with bound daunomycin and with Trp-67 and Trp-96 replaced… · DM1 A201 · binds VAL15, MET89, ALA92, PHE93, I3D96, MET8, VAL15, PHE93 and 3 more
- 110D · Anthracycline-DNA interactions at unfavourable base base- pair triplet-binding sites… · DM1 A7 · binds DC4, DC5, DG6
- 152D · Diversity of water ring size at DNA interfaces: hydration and dynamics of… · DM1 A7 · binds DT4, DC5, DG6
- 1D10 · Structural comparison of anticancer drug-DNA complexes. adriamycin and daunomycin · DM1 A7 · binds DT4, DC5, DG6
- 1D11 · Interactions between an anthracycline antibiotic and DNA molecular structure of… · DM1 A7 · binds DA4, DC5, DG6
- 1D33 · Formaldehyde cross-links daunorubicin and DNA efficiently: hplc and X-ray diffraction… · DM1 A7 · binds G494, DC5, DG6
- 1DA0 · DNA-drug interactions: the crystal structure of D(CGATCG) complexed with daunomycin · DM1 A7 · binds DT4, DC5, DG6
- 1JO2 · Crystal structure of the B-DNA hexamer (CGATCG).DAUNOMYCIN complex containing a ribose at… · DM1 A7 · binds DC1, G2, DA3, DT4
- 1O0K · Structure of the first parallel DNA quadruplex-drug complex · DM1 B25 · binds DT1001, DG1002, DG1008, DG1014, DG1015, DG1016
- 1VTH · DNA-drug interactions: the crystal structures of D(TGTACA) complexed with daunomycin · DM1 A7 · binds DA4, DC5, DA6
- 1VTI · DNA-drug interactions: the crystal structures of D(TGATCA) complexed with daunomycin · DM1 A7 · binds DT4, DC5, DA6
- 2D34 · Formaldehyde cross-links daunorubicin and DNA efficiently: hplc and X-ray diffraction… · DM1 A7 · binds A404, DC5, DG6
- 308D · Binding of daunomycin to B-D-glucosylated DNA found in protozoa trypanosoma brucei… · DM1 A14 · binds DA4, DC5, DG6, DC7, DG8, DT9, DA10
Residues it binds most
DG 28, DC 26, DT 20, DA 12, ALA 7, MET 5, PHE 7, VAL 5, ARG 2, ASP 5 (residue and the binding sites it lines).
Found with
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