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MolNFT v1 · #3714 · DNA

Interactions between an anthracycline antibiotic and DNA molecular structure of daunomycin complexed to D(CPGPTPAPCPG) at 1.2-ångströms resolution

1D11 · DNA (5'-D(*CP*GP*TP*AP*CP*G)-3'): “Interactions between an anthracycline antibiotic and DNA molecular structure of daunomycin complexed to…”. X-ray diffraction, 2 ligands (DM1, NA). MolNFT v1 #3714 on GenesisL1: 3D structure…

PDB
1D11
Type
DNA
Length
6 nucleotides
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
DNA (5'-D(*CP*GP*TP*AP*CP*G)-3')
Ligands
DM1, NA

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
ADNA (5'-D(*CP*GP*TP*AP*CP*G)-3')dna6——

Ligands and binding sites

  • DM1 · Daunomycin · ligand · chains A
  • NA · Sodium ion · metal

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 1D11 · Interactions between an anthracycline antibiotic and DNA molecular structure of… · the same entry in another collection · chain A against A, TM-score 1.00

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