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Ligand · DKA

DKA · Decanoic acid

DKA, Decanoic acid (C10 H20 O2, 172.3 g/mol), in the MolNFT structures on GenesisL1: bound in 13 records (11 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
DKA
Formula
C10 H20 O2
Class
ligand
Structures
13
PDB entries
11

Binding sites

DKA in 13 structures; the first of them:

  • 5IBO · 1.95A resolution structure of NanoLuc luciferase · DKA A201 · binds ARG43, HIS57, TYR81, PRO82, VAL83, LYS89, ILE91
  • 6BTM · Structure of Alternative Complex III from Flavobacterium johnsoniae (Wild Type) · DKA B1103 · binds LEU243, CYS2, GLU3, TYR10, GLN11, TYR12
  • 6LQ2 · Crystal Structure of E447A Acyl-CoA Dehydrogenase FadE5 mutant from Mycobacteria… · DKA A702 · binds MET130, MET134, ALA160, THR161, MET162, THR198, MET303, TYR446 and 1 more
  • 6XIU · ETEC Rns bound to a potential inhibitor, decanoic acid · DKA A301 · binds ILE14, ILE17, MET18, ILE19, HIS20, LEU25, MET32, VAL59 and 8 more
  • 7BGZ · Mutant L39K of recombinant beta-lactoglobulin in complex with endogenous ligand · DKA AAA201 · binds PRO38, VAL41, VAL43, LEU46, LEU54, ILE56, LEU58, ILE71 and 5 more
  • 8CNK · Cryo-EM structure of retinal-free proteoopsin bound to decanoate · DKA A301 · binds TRP99, VAL103, LEU106, MET135, LEU136, PHE153, GLY156, CYS157 and 5 more
  • 8Z5F · Crystal structure of beta-ketoacyl-ACP synthase FabF K336A in complex with decanoyl-ACP… · DKA A501 · binds GLY111, ILE112, LEU115, ALA166, CYS167, GLU195, PHE206, LEU343 and 5 more
  • 9GKY · Crystal Structure of Histone deacetylase (HdaH) from Vibrio cholerae in complex with… · DKA A401 · binds LEU24, TYR32, ILE34, TYR37, PHE98, ARG107, GLY134, TYR135 and 11 more
  • 6KD5 · Crystal structure of the extracellular domain of MSPL/TMPRSS13 in complex with… · DKA C1 · binds GLU458, THR533, GLN537, ARG2, VAL3
  • 6LQ2 · Crystal structure of E447A acyl-CoA dehydrogenase FADE5 mutant from mycobacteria… · DKA A702 · binds MET130, MET134, ALA160, THR161, MET162, THR198, MET303, TYR446 and 1 more
  • 6XIU · Etec rns bound to a potential inhibitor, decanoic acid · DKA A301 · binds ILE17, MET18, ILE19, HIS20, LEU25, TYR71, ARG75, SER215 and 1 more
  • 6XIV · Semet-rns, in complex with potential inhibitor · DKA A301 · binds ILE17, MSE18, HIS20, LYS21, TYR71, ARG75, PHE258, PHE262
  • 7FG5 · Room temperature structure of the human heart fatty acid-binding protein complexed with… · DKA A200 · binds MET20, ARG78, LEU115, ARG126, TYR128
  • 7MJB · Crystal structure of nanoluc luciferase mutant R164Q · DKA A201 · binds ARG45, HIS59, ILE61, TYR83, PRO84, VAL85, LYS91

Residues it binds most

TYR 24, MET 15, PHE 16, LEU 14, ILE 14, GLY 9, HIS 12, ARG 14, VAL 12, ALA 8 (residue and the binding sites it lines).

Found with

  • COA · Coenzyme A
  • FAD · Flavin-adenine dinucleotide
  • 0QE · Chloromethane
  • F3S · FE3-S4 cluster
  • FAW · (2S)-3-hydroxypropane-1,2-diyl ditetradecanoate
  • HEC · Heme C
  • LMR · (2S)-2-hydroxybutanedioic acid
  • PN7 · N~3~-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy) butanoyl]-N-(2-sulfanylethyl)-beta-alaninamide
  • SF4 · Iron/sulfur cluster
  • CA · Calcium ion
  • K · Potassium ion
  • NA · Sodium ion

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