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Ligand · DGU

DGU · D-galacturonic acid

DGU, D-galacturonic acid (C6 H10 O7, 194.1 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
DGU
Formula
C6 H10 O7
Class
sugar
Structures
4
PDB entries
2

Binding sites

DGU in 4 structures; the first of them:

  • 3QPE · Crystal structure of Galacturonate Dehydratase from GEOBACILLUS SP. complexed with… · DGU A401 · binds ASN33, ILE36, HIS39, THR133, TYR136, LYS168, LYS170, ASP207 and 6 more
  • 4EW9 · The liganded structure of C. bescii family 3 pectate lyase · DGU A210 · binds GLU39, GLU84, ASP85, THR88, GLN111, ASN113, ASN135
  • 3QPE · Crystal structure of galacturonate dehydratase from geobacillus sp. complexed with… · DGU A401 · binds ASN33, ILE36, HIS39, THR133, TYR136, LYS168, LYS170, ASP207 and 6 more
  • 4EW9 · The liganded structure of C. bescii family 3 pectate lyase · DGU A210 · binds GLU39, GLU84, ASP85, THR88, GLN111, ASN113, ASN135

Residues it binds most

GLU 6, ASN 6, ASP 6, THR 6, GLN 4, HIS 2, LYS 2, TYR 2, ILE 2 (residue and the binding sites it lines).

Found with

  • AQA · 4-deoxy-beta-L-threo-hex-4-enopyranuronic acid
  • D54 · 4-deoxy-L-threo-hex-5-ulosuronic acid
  • CA · Calcium ion
  • MG · Magnesium ion
  • ADA · alpha-D-galactopyranuronic acid
  • ACT · Acetate ion
  • GOL · Glycerol
  • MPD · (4S)-2-methyl-2,4-pentanediol

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