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Ligand · D54

D54 · 4-deoxy-L-threo-hex-5-ulosuronic acid

D54, 4-deoxy-L-threo-hex-5-ulosuronic acid (C6 H8 O6, 176.1 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
D54
Formula
C6 H8 O6
Class
ligand
Structures
2
PDB entries
1

Binding sites

D54 in 2 structures; the first of them:

  • 3QPE · Crystal structure of Galacturonate Dehydratase from GEOBACILLUS SP. complexed with… · D54 B401 · binds ASN33, ILE36, HIS39, THR133, TYR136, LYS168, LYS170, ASP207 and 7 more
  • 3QPE · Crystal structure of galacturonate dehydratase from geobacillus sp. complexed with… · D54 B401 · binds ASN33, ILE36, HIS39, THR133, TYR136, LYS168, LYS170, ASP207 and 7 more

Residues it binds most

GLU 6, ASN 6, HIS 6, LYS 6, TYR 6, ASP 6, CYS 6, ILE 6, THR 6 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • DGU · D-galacturonic acid
  • GOL · Glycerol

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