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Ligand · DAS

DAS · D-aspartic acid

DAS, D-aspartic acid (C4 H7 N O4, 133.1 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
DAS
Formula
C4 H7 N O4
Class
ligand
Structures
4
PDB entries
4

Binding sites

DAS in 4 structures; the first of them:

  • 1HG1 · X-ray structure of the complex between Erwinia chrysanthemi L-asparaginase and D-aspartate · DAS A350 · binds GLY14, THR15, ALA61, SER62, GLU63, GLY94, THR95, ASP96 and 2 more
  • 1KS7 · Thermolysin complexed with Z-D-Aspartic acid (benzyloxycarbonyl-D-Aspartic acid) · DAS A1317 · binds ASN112, ALA113, PHE114, HIS142, GLU143, HIS146, TYR157, GLU166 and 1 more
  • 5XGX · Crystal structure of colwellia psychrerythraea strain 34H isoaspartyl dipeptidase E80Q… · DAS A403 · binds HIS73, GLY77, GLY78, GLN80, GLY108, THR109, ASP110, TYR140 and 7 more
  • 6R7R · Crystal structure of the glutamate transporter homologue GltTk in complex with D-aspartate · DAS A504 · binds ARG278, SER279, SER280, MET314, THR317, THR355, ALA356, GLY357 and 9 more

Residues it binds most

GLY 9, THR 9, ALA 8, SER 7, ASP 9, ARG 5, GLU 7, HIS 3, ASN 4, MET 4 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion
  • DLY · D-lysine
  • PHQ · benzyl chlorocarbonate
  • CA · Calcium ion
  • NA · Sodium ion
  • 1PE · Pentaethylene glycol
  • DMU · Decyl-beta-D-maltopyranoside
  • P6G · Hexaethylene glycol
  • PEG · Di(hydroxyethyl)ether
  • PG4 · Tetraethylene glycol
  • PGE · Triethylene glycol

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