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Ligand · COO

COO · Crotonyl coenzyme A

COO, Crotonyl coenzyme A (C25 H40 N7 O17 P3 S, 835.6 g/mol), in the MolNFT structures on GenesisL1: bound in 9 records (6 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
COO
Formula
C25 H40 N7 O17 P3 S
Class
ligand
Structures
9
PDB entries
6

Binding sites

COO in 9 structures; the first of them:

  • 5I0K · Insights into Substrate Modification by Dehydratases from Type I Polyketide Synthases · COO A1301 · binds PHE959, ILE961, LEU967, PRO968, GLY969, LEU999, ARG1000, GLN1001 and 4 more
  • 5LBX · Structure of the T175V Etr1p mutant in the trigonal form P312 in complex with NADP and… · COO A410 · binds SER70, ASN73, TYR79, TYR296, GLY297, GLY298, MET299, PHE301 and 9 more
  • 5LKZ · Crystal structure of the p300 acetyltransferase catalytic core with crotonyl-coenzyme A. · COO A1705 · binds TYR1394, ILE1395, SER1396, TYR1397, LEU1398, ASP1399, SER1400, ARG1410 and 17 more
  • 6JQO · Structure of PaaZ, a bifunctional enzyme in complex with NADP+ and CCoA · COO A802 · binds LYS69, VAL98, GLY102, PHE108, THR109, SER112, PHE159, TRP162 and 7 more
  • 8BQ6 · Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (Complete conformation… · COO y301 · binds ARG152, MET169, GLU170, VAL185, PRO187, PRO188, ARG190, ASN201 and 18 more
  • 5LBX · Structure of the T175V ETR1P mutant in the trigonal form P312 in complex with NADP and… · COO A410 · binds SER70, ASN73, TYR79, GLY297, GLY298, PHE301, TRP322, VAL323 and 5 more
  • 5LKZ · Crystal structure of the P300 acetyltransferase catalytic core with crotonyl-coenzyme a. · COO A1705 · binds TYR1394, SER1396, TYR1397, LEU1398, ASP1399, SER1400, ARG1410, THR1411 and 13 more
  • 6JQO · Structure of paaz, a bifunctional enzyme in complex with NADP+ and ccoa · COO A802 · binds LYS69, VAL98, GLY102, PHE108, THR109, SER112, PHE159, TRP162 and 7 more
  • 7D0R · Crystal structure of human HBO1-BRPF2 in complex with crotonoyl- coenzyme a · COO A703 · binds LEU429, SER473, CYS474, ILE475, LEU476, THR477, MET482, ARG483 and 12 more

Residues it binds most

LEU 16, PRO 20, SER 20, PHE 20, ARG 20, GLY 17, THR 20, TRP 18, VAL 17, TYR 8 (residue and the binding sites it lines).

Found with

  • NAP · Nadp nicotinamide-adenine-dinucleotide phosphate
  • ZN · Zinc ion
  • CL · Chloride ion
  • SO4 · Sulfate ion
  • GOL · Glycerol
  • 8Q1 · S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy) butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate
  • FES · Fe2/s2 (inorganic) cluster
  • FMN · Flavin mononucleotide
  • HEM · Protoporphyrin IX containing Fe
  • NDP · Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate
  • SF4 · Iron/sulfur cluster
  • UQ5 · 2,3-dimethoxy-5-methyl-6-(3,11,15,19-tetramethyl-eicosa-2,6,10,14,18-pentaenyl)-[1,4]benzoquinone

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