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Ligand · BYN

BYN · hydroxylated prenyl-FMN

BYN, hydroxylated prenyl-FMN (C22 H31 N4 O10 P, 542.5 g/mol), in the MolNFT structures on GenesisL1: bound in 15 records (12 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
BYN
Formula
C22 H31 N4 O10 P
Class
ligand
Structures
15
PDB entries
12

Binding sites

BYN in 15 structures; the first of them:

  • 6R2R · Aspergillus niger ferulic acid decarboxylase (Fdc) in complex with prFMN (purified in… · BYN A604 · binds GLN152, THR153, TYR154, ASN168, TRP169, SER170, ILE171, ALA172 and 20 more
  • 6R3L · Aspergillus niger ferulic acid decarboxylase (Fdc) in complex with the covalent adduct… · BYN A605 · binds GLN152, THR153, TYR154, ASN168, TRP169, SER170, ILE171, ALA172 and 20 more
  • 6TIB · Structure of A. niger Fdc I327S variant in complex with 2 naphthoic acid · BYN AAA604 · binds GLN152, THR153, TYR154, ASN168, TRP169, SER170, ILE171, ALA172 and 19 more
  • 6TIC · Structure of A. niger Fdc I327S variant in complex with benzothiophene 2 carboxylic acid · BYN AAA604 · binds GLN152, THR153, ASN168, TRP169, SER170, ILE171, ALA172, ARG173 and 18 more
  • 7NF4 · Structure of A. niger Fdc T395M R435P P438W variant (AnFdcII) in complex with prFMN · BYN A603 · binds GLN152, THR153, TYR154, ASN168, TRP169, SER170, ILE171, ALA172 and 21 more
  • 6EV5 · Crystal structure of E282Q a. niger FDC1 with prfmn in the hydroxylated form · BYN A604 · binds THR153, ASN168, TRP169, SER170, ILE171, ALA172, ARG173, LEU185 and 11 more
  • 6EV6 · Structure of E282Q a. niger FDC1 with prfmn in the hydroxylated and ketimine forms · BYN A605 · binds THR153, ASN168, TRP169, SER170, ILE171, ALA172, ARG173, GLN190 and 11 more
  • 6EV8 · Structure of E277Q a. niger FDC1 with prfmn in the hydroxylated form · BYN A604 · binds THR153, ASN168, TRP169, SER170, ILE171, ALA172, ARG173, LEU185 and 12 more
  • 6EV9 · Structure of E277D a. niger FDC1 with prfmn in the hydroxylated form · BYN A604 · binds THR153, ASN168, TRP169, SER170, ILE171, ALA172, ARG173, LEU185 and 12 more
  • 6EVD · Structure of R173A a. niger FDC1 with prfmn in the hydroxylated form · BYN A603 · binds THR153, ASN168, TRP169, SER170, ILE171, ALA172, ALA173, GLN190 and 12 more
  • 6R2R · Aspergillus niger ferulic acid decarboxylase (fdc) in complex with prfmn (purified in… · BYN A604 · binds THR153, ASN168, TRP169, SER170, ILE171, ALA172, ARG173, LEU185 and 12 more
  • 6R3L · Aspergillus niger ferulic acid decarboxylase (fdc) in complex with the covalent adduct… · BYN A605 · binds THR153, ASN168, TRP169, SER170, ILE171, ALA172, ARG173, LEU185 and 12 more
  • 6R3N · Aspergillus niger ferulic acid decarboxylase (fdc) in complex with the covalent adduct… · BYN A602 · binds THR153, ASN168, TRP169, SER170, ILE171, ALA172, ARG173, LEU185 and 12 more
  • 7NF0 · T. atroviride fdc variant tafdcv in complex with hydroxylated prfmn · BYN A702 · binds THR163, ASN178, TRP179, SER180, ILE181, ALA182, ARG183, LEU195 and 14 more
  • 7NF4 · Structure of a. niger fdc T395M R435P P438W variant (anfdcii) in complex with prfmn · BYN A603 · binds THR153, ASN168, TRP169, SER170, ILE171, ALA172, ARG173, LEU185 and 15 more

Residues it binds most

SER 18, ILE 18, GLU 18, THR 18, MET 18, GLN 18, ALA 18, ASN 18, HIS 18, LEU 16 (residue and the binding sites it lines).

Found with

  • K · Potassium ion
  • MN · Manganese (II) ion
  • 4LW · (2Z)-2-fluoro-3-phenylprop-2-enoic acid
  • JSH · prFMN cofactor and cinnamic acid adduct
  • SYN · ethenylbenzene
  • SCN · Thiocyanate ion
  • FIV · naphthalene-2-carboxylic acid
  • FZZ · 1-deoxy-5-O-phosphono-1-[(10AR)-2,2,3,4-tetramethyl-8, 10-dioxo-1,2,8,9,10,10A-hexahydro-6H-indeno[1,7-ef]pyrimido[4,5-b][1,4]diazepin-6-yl]-D-ribitol
  • JRK · Prfmn cofactor and butynoic acid adduct
  • ND8 · benzothiophene 2 carboxylic acid
  • NO3 · Nitrate ion
  • ACT · Acetate ion

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