Ligand · BLB

BLB · Bleomycin B2

BLB, Bleomycin B2 (C55 H85 N20 O21 S2 +1, 1426.5 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component: BLB
Formula: C55 H85 N20 O21 S2 +1
Class: ligand
Structures: 6
PDB entries: 3

Binding sites

BLB in 6 structures; the first of them:

1G5L · CO(III)-bleomycin-ooh bound to an oligonucleotide containing a phosphoglycolate lesion · BLB C1 · binds DG6, DA8, DC9, DT10, DG11, DG12, DA17, DG18 and 3 more
1GJ2 · CO(III)-bleomycin-ooh bound to an oligonucleotide containing a phosphoglycolate lesion · BLB C1 · binds DG6, DA8, DC9, DT10, DG11, DG12, DG13, DA17 and 3 more
2R2S · Co(III)bleomycinB2 bound to d(ATTAGTTATAACTAAT) complexed with MMLV RT catalytic fragment · BLB B9 · binds DA4, DG5, DT6, DT7, DT9, DA10, DA11, DC12 and 3 more
1G5L · CO(III)-bleomycin-ooh bound to an oligonucleotide containing a phosphoglycolate lesion · BLB C1 · binds DG6, DA8, DC9, DT10, DG11, DG12, DA17, DG18 and 3 more
1GJ2 · CO(III)-bleomycin-ooh bound to an oligonucleotide containing a phosphoglycolate lesion · BLB C1 · binds DG6, DA8, DC9, DT10, DG11, DG12, DG13, DA17 and 3 more
2R2S · CO(III)BLEOMYCINB2 bound to D(ATTAGTTATAACTAAT) complexed with mmlv rt catalytic fragment · BLB B9 · binds DA4, DG5, DT6, DT7, DT9, DA10, DA11, DC12 and 3 more

Residues it binds most

DA 6, DG 6, DT 6, DC 6 (residue and the binding sites it lines).

Found with

3CO · Cobalt (III) ion
PEO · Hydrogen peroxide
PGA · 2-phosphoglycolic acid
O · Oxygen atom

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