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Ligand · AYD

AYD · 4-{[(4'-amino-2'-methylpyrimidin-5'-yl)methyl]amino}pent-3-enyl diphosphate

AYD, 4-{[(4'-amino-2'-methylpyrimidin-5'-yl)methyl]amino}pent-3-enyl diphosphate (C11 H20 N4 O7 P2, 382.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å…

Component
AYD
Formula
C11 H20 N4 O7 P2
Class
ligand
Structures
2
PDB entries
1

Binding sites

AYD in 2 structures; the first of them:

  • 1N0H · Crystal Structure of Yeast Acetohydroxyacid Synthase in Complex with a Sulfonylurea… · AYD A700 · binds VAL497, GLY498, GLN499, HIS500, GLY523, THR524, MET525, GLY549 and 19 more
  • 1N0H · Crystal structure of yeast acetohydroxyacid synthase in complex with a sulfonylurea… · AYD A700 · binds VAL497, GLY498, GLN499, HIS500, GLY523, THR524, MET525, GLY549 and 19 more

Residues it binds most

GLY 2, GLN 2, MET 2, ASN 2, GLU 2, PRO 2, THR 2, VAL 2, ALA 2, ASP 2 (residue and the binding sites it lines).

Found with

  • CIE · 2-[[[[(4-chloro-6-methoxy-2-pyrimidinyl) amino]carbonyl]amino]sulfonyl]benzoic acid ethyl ester
  • FAD · Flavin-adenine dinucleotide
  • TPP · Thiamine diphosphate
  • K · Potassium ion
  • MG · Magnesium ion
  • DTT · 2,3-dihydroxy-1,4-dithiobutane

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