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Ligand · AH2

AH2 · 1-deoxy-alpha-D-mannopyranose

AH2, 1-deoxy-alpha-D-mannopyranose (C6 H12 O5, 164.2 g/mol), in the MolNFT structures on GenesisL1: bound in 9 records (7 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
AH2
Formula
C6 H12 O5
Class
ligand
Structures
9
PDB entries
7

Binding sites

AH2 in 9 structures; the first of them:

  • 5MUC · Crystal structure of the FimH lectin domain in complex with 1,5-Anhydromannitol · AH2 A301 · binds PHE1, ILE13, ASN46, ASP47, TYR48, ILE52, ASP54, GLN133 and 3 more
  • 6LKN · Crystal structure of ATP11C-CDC50A in PtdSer-bound E2P state · AH2 C404
  • 8GYY · Bifunctional xylosidase/glucosidase LXYL with intermediate substrate xylose, 120 seconds · AH2 J3 · binds VAL772, VAL773, GLN775
  • 8OJO · Galectin-3 in complex with 2,6-Anhydro-5-S-(beta-D-galactopyranosyl)-5-thio-D-altritol · AH2 A304 · binds ARG162, GLU165, GLU184, ARG186
  • 9DXT · Ligand-binding and transmembrane domains of kainate receptor GluK2 in complex with… · AH2 B1007 · binds THR730
  • 5MUC · Crystal structure of the fimh lectin domain in complex with 1,5- anhydromannitol · AH2 A301 · binds PHE1, ILE13, ASN46, ASP47, TYR48, ILE52, ASP54, GLN133 and 3 more
  • 6LKN · Crystal structure of ATP11C-CDC50A in ptdser-bound E2P state · AH2 C404
  • 7BSU · Cryo-EM structure of a human ATP11C-CDC50A flippase in ptdser-bound E2BEF state · AH2 C403
  • 8CYB · SARS-cov-2 spike protein in complex with a pan-sarbecovirus nanobody 1-8 · AH2 A1312

Residues it binds most

ASP 4, ASN 4, ILE 4, PHE 4, GLN 5, TYR 4, ARG 1, GLU 1, SER 2, THR 2 (residue and the binding sites it lines).

Found with

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • MG · Magnesium ion
  • BMA · beta-D-mannopyranose
  • MAN · alpha-D-mannopyranose
  • 2J9 · 4-cyclopropyl-7-fluoro-3,4-dihydro-2H-1,2,4-benzothiadiazine 1,1-dioxide
  • A1BDT · N,N'-[butane-1,4-diylbis(azanediylpropane-3,1-diyl)]bis[3-(3,4-dihydroxyphenyl)propanamide]
  • BKR · Deacetyltaxol
  • CLR · Cholesterol
  • POV · (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate
  • XLS · D-xylose
  • YIO · 1-thio-beta-D-galactopyranose
  • FUC · alpha-L-fucopyranose

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