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Ligand · ABL

ABL · (2R,3R,4R,5R)-4,5-dihydroxy-2-(hydroxymethyl)-6-oxopiperidin-3-yl beta-D-glucopyranoside

ABL, (2R,3R,4R,5R)-4,5-dihydroxy-2-(hydroxymethyl)-6-oxopiperidin-3-yl beta-D-glucopyranoside (C12 H21 N O10, 339.3 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (4 PDB entries). Every binding site with its residues…

Component
ABL
Formula
C12 H21 N O10
Class
sugar
Structures
8
PDB entries
4

Binding sites

ABL in 8 structures; the first of them:

  • 1NAA · Cellobiose Dehydrogenase Flavoprotein Fragment in Complex with Cellobionolactam · ABL A901 · binds PHE278, GLU279, PHE282, PHE297, GLY310, LEU312, SER562, PRO563 and 9 more
  • 2AXR · Crystal structure of glucooligosaccharide oxidase from Acremonium strictum: a novel… · ABL A505 · binds TYR72, THR129, CYS130, ARG245, GLU247, TYR300, GLU314, TRP351 and 4 more
  • 3RJA · Crystal structure of carbohydrate oxidase from Microdochium nivale in complex with… · ABL A604 · binds PHE29, TYR72, THR131, CYS132, ARG248, TYR252, ASN304, GLU317 and 7 more
  • 4QI5 · Dehydrogenase domain of Myriococcum thermophilum cellobiose dehydrogenase with bound… · ABL A902 · binds ASN292, TRP295, ALA322, LEU324, ALA575, PRO576, ILE578, THR599 and 7 more
  • 1NAA · Cellobiose dehydrogenase flavoprotein fragment in complex with cellobionolactam · ABL A901 · binds PHE278, GLU279, PHE282, PHE297, GLY310, LEU312, SER562, PRO563 and 9 more
  • 2AXR · Crystal structure of glucooligosaccharide oxidase from acremonium strictum: a novel… · ABL A505 · binds TYR72, THR129, CYS130, ARG245, GLU247, TYR300, GLU314, TRP351 and 4 more
  • 3RJA · Crystal structure of carbohydrate oxidase from microdochium nivale in complex with… · ABL A604 · binds PHE29, TYR72, THR131, CYS132, ARG248, TYR252, ASN304, GLU317 and 7 more
  • 4QI5 · Dehydrogenase domain of myriococcum thermophilum cellobiose dehydrogenase with bound… · ABL A902 · binds ASN292, TRP295, ALA322, LEU324, ALA575, PRO576, ILE578, THR599 and 7 more

Residues it binds most

TYR 12, ASN 8, PHE 6, ARG 10, GLU 10, THR 12, GLN 6, SER 6, ALA 6, PRO 8 (residue and the binding sites it lines).

Found with

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • FAD · Flavin-adenine dinucleotide
  • ZN · Zinc ion
  • 6FA · 6-hydroxy-flavin-adenine dinucleotide
  • CD · Cadmium ion
  • CL · Chloride ion
  • SO4 · Sulfate ion
  • TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol

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