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Ligand · 5YC

5YC · 7-[[ethyl(phenyl)amino]methyl]-2-methyl-[1,3,4]thiadiazolo[3,2-a]pyrimidin-5-one

5YC, 7-[[ethyl(phenyl)amino]methyl]-2-methyl-[1,3,4]thiadiazolo[3,2-a]pyrimidin-5-one (C15 H16 N4 O S, 300.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5…

Component
5YC
Formula
C15 H16 N4 O S
Class
ligand
Structures
2
PDB entries
2

Binding sites

5YC in 2 structures; the first of them:

  • 5H8H · Structure of the human GluN1/GluN2A LBD in complex with GNE3419 · 5YC B303 · binds ILE116, PRO129, PHE130, VAL131, GLU132, THR241, THR242, GLY243 and 10 more
  • 5H8S · Structure of the human GluA2 LBD in complex with GNE3419 · 5YC A302 · binds LYS104, PRO105, PHE106, MET107, SER108, SER217, LYS218, GLY219 and 11 more

Residues it binds most

SER 3, LYS 3, GLY 3, PHE 3, PRO 3, LEU 3, MET 2, ILE 2, THR 1, VAL 1 (residue and the binding sites it lines).

Found with

  • GLU · Glutamic acid
  • GLY · Glycine
  • CA · Calcium ion
  • ZN · Zinc ion
  • ACT · Acetate ion
  • CAC · Cacodylate ion

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