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Ligand · 5X6

5X6 · Zeaxanthin

5X6, Zeaxanthin (C40 H56 O2, 568.9 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
5X6
Formula
C40 H56 O2
Class
ligand
Structures
2
PDB entries
2

Binding sites

5X6 in 2 structures; the first of them:

  • 8WEY · PSI-LHCI of the red alga Cyanidium caldarium RK-1 (NIES-2137) · 5X6 F205 · binds LEU704, PHE457, THR90, ASP91, GLY92, PHE100, THR111, GLY112 and 6 more
  • 8XLS · PSI-FCPI of the diatom Thalassiosira pseudonana CCMP1335 · 5X6 J105 · binds TRP119, PRO120, ILE121, TYR7, PRO12, VAL13, THR16, THR20 and 5 more

Residues it binds most

LEU 22, PHE 21, ALA 14, ILE 17, GLN 12, PRO 15, ARG 13, HIS 9, VAL 12, GLY 13 (residue and the binding sites it lines).

Found with

  • BCR · Beta-carotene
  • CL0 · Chlorophyll A isomer
  • CLA · Chlorophyll A
  • DGD · Digalactosyl diacyl glycerol (dgdg)
  • LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole
  • PQN · Phylloquinone
  • SF4 · Iron/sulfur cluster
  • UNL · Unknown ligand
  • LMT · Dodecyl-beta-D-maltoside
  • A86 · (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate
  • DD6 · (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol
  • KC1 · Chlorophyll c1

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