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Ligand · 38T

38T · 5-methyluridine

38T, 5-methyluridine (C10 H14 N2 O6, 258.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
38T
Formula
C10 H14 N2 O6
Class
ligand
Structures
2
PDB entries
2

Binding sites

38T in 2 structures; the first of them:

  • 4QSW · Structure of the bromodomain of human ATPase family AAA domain-containing protein 2… · 38T A1207 · binds VAL1008, VAL1013, ASP1014, GLU1017, VAL1018, TYR1021, ALA1060, TYR1063 and 2 more
  • 8OI9 · Trichomonas vaginalis riboside hydrolase in complex with 5-methyluridine · 38T A402 · binds ASP10, ASP14, ASP15, ASN39, THR142, MET167, ASN176, GLU182 and 7 more

Residues it binds most

ASP 3, ASN 3, PHE 2, TYR 3, GLU 3, VAL 1, HIS 2, LEU 2, MET 2, THR 2 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion
  • PIN · Piperazine-N,N'-bis(2-ethanesulfonic acid)
  • CA · Calcium ion
  • MG · Magnesium ion
  • NI · Nickel (II) ion
  • EDO · 1,2-ethanediol

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