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Ligand · 1DO

1DO · 1-dodecanol

1DO, 1-dodecanol (C12 H26 O, 186.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
1DO
Formula
C12 H26 O
Class
ligand
Structures
4
PDB entries
3

Binding sites

1DO in 4 structures; the first of them:

  • 5ZGB · Cryo-EM structure of the red algal PSI-LHCR · 1DO 3219 · binds VAL258, VAL85
  • 5ZGB · Cryo-EM structure of the red algal psi-lhcr · 1DO 3219 · binds VAL258, VAL85
  • 5ZGH · Cryo-EM structure of the red algal psi-lhcr · 1DO 3219
  • 7M5V · Human ATP13A2 in the amppnp-bound occluded state · 1DO A1202 · binds SER425, LEU432, LEU473, MET477, PHE934, ALA938, SER941, LEU996

Residues it binds most

LEU 3, VAL 3, ALA 2, PHE 2, SER 1, MET 1, THR 1, TRP 1, TYR 1 (residue and the binding sites it lines).

Found with

  • 3XQ · (2S)-2,3-dihydroxypropyl octadecanoate
  • BCR · Beta-carotene
  • CL0 · Chlorophyll A isomer
  • CLA · Chlorophyll A
  • DGD · Digalactosyl diacyl glycerol (dgdg)
  • LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole
  • PQN · Phylloquinone
  • SF4 · Iron/sulfur cluster
  • ZEX · (1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol
  • BGC · beta-D-glucopyranose
  • ANP · Phosphoaminophosphonic acid-adenylate ester
  • D10 · Decane

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