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Ligand · 13D

13D · 1,3-diaminopropane

13D, 1,3-diaminopropane (C3 H10 N2, 74.1 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
13D
Formula
C3 H10 N2
Class
ligand
Structures
2
PDB entries
2

Binding sites

13D in 2 structures; the first of them:

  • 8A0G · Human deoxyhypusine synthase with trapped transition state · 13D A401 · binds HIS288, ASN292, LEU295, TRP327, 5GG329, GLU136, TYR176, GLY239 and 2 more
  • 8A9N · Structure of DpA polyamine acetyltransferase in complex with 1,3-DAP · 13D B204 · binds VAL71, PHE139, TYR21, TYR25, ASP80, ASP81, GLU116

Residues it binds most

ASP 2, TYR 2, GLU 2, 5GG 1, ASN 1, GLY 1, HIS 1, LEU 1, PHE 1, SER 1 (residue and the binding sites it lines).

Found with

  • COA · Coenzyme A
  • LFU · ~{N}-(3-azanylpropyl)ethanamide
  • NAD · Nicotinamide-adenine-dinucleotide
  • SPD · Spermidine
  • MG · Magnesium ion
  • GOL · Glycerol
  • MRD · (4R)-2-methylpentane-2,4-diol

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